Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1289

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1287 and EX28DRAFT_1288 are separated by 42 nucleotidesEX28DRAFT_1288 and EX28DRAFT_1289 overlap by 29 nucleotidesEX28DRAFT_1289 and EX28DRAFT_1290 are separated by 12 nucleotides EX28DRAFT_1287: EX28DRAFT_1287 - hypothetical protein, at 1,301,604 to 1,302,341 _1287 EX28DRAFT_1288: EX28DRAFT_1288 - Phage Mu protein F like protein, at 1,302,384 to 1,303,340 _1288 EX28DRAFT_1289: EX28DRAFT_1289 - hypothetical protein, at 1,303,312 to 1,304,781 _1289 EX28DRAFT_1290: EX28DRAFT_1290 - hypothetical protein, at 1,304,794 to 1,306,266 _1290 Position (kb) 1303 1304 1305Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1302.385 kb on + strandat 1302.390 kb on - strandat 1302.521 kb on - strand, within EX28DRAFT_1288at 1302.547 kb on + strand, within EX28DRAFT_1288at 1302.901 kb on - strand, within EX28DRAFT_1288at 1302.931 kb on + strand, within EX28DRAFT_1288at 1302.931 kb on + strand, within EX28DRAFT_1288at 1303.000 kb on + strand, within EX28DRAFT_1288at 1303.001 kb on - strand, within EX28DRAFT_1288at 1303.036 kb on - strand, within EX28DRAFT_1288at 1303.043 kb on - strand, within EX28DRAFT_1288at 1303.105 kb on + strand, within EX28DRAFT_1288at 1303.106 kb on - strand, within EX28DRAFT_1288at 1303.106 kb on - strand, within EX28DRAFT_1288at 1303.474 kb on - strand, within EX28DRAFT_1289at 1303.496 kb on + strand, within EX28DRAFT_1289at 1303.530 kb on + strand, within EX28DRAFT_1289at 1303.530 kb on + strand, within EX28DRAFT_1289at 1303.531 kb on - strand, within EX28DRAFT_1289at 1303.713 kb on + strand, within EX28DRAFT_1289at 1304.352 kb on + strand, within EX28DRAFT_1289at 1304.353 kb on - strand, within EX28DRAFT_1289at 1304.353 kb on - strand, within EX28DRAFT_1289at 1304.356 kb on + strand, within EX28DRAFT_1289at 1304.357 kb on - strand, within EX28DRAFT_1289at 1304.376 kb on + strand, within EX28DRAFT_1289at 1304.606 kb on + strand, within EX28DRAFT_1289at 1304.610 kb on + strand, within EX28DRAFT_1289at 1304.610 kb on + strand, within EX28DRAFT_1289at 1304.610 kb on + strand, within EX28DRAFT_1289at 1304.611 kb on - strand, within EX28DRAFT_1289at 1304.611 kb on - strand, within EX28DRAFT_1289at 1304.611 kb on - strand, within EX28DRAFT_1289at 1304.611 kb on - strand, within EX28DRAFT_1289at 1304.611 kb on - strand, within EX28DRAFT_1289at 1304.615 kb on + strand, within EX28DRAFT_1289at 1304.660 kb on + strandat 1304.711 kb on + strandat 1304.766 kb on + strandat 1304.795 kb on + strandat 1304.804 kb on - strandat 1305.062 kb on + strand, within EX28DRAFT_1290at 1305.062 kb on + strand, within EX28DRAFT_1290at 1305.063 kb on - strand, within EX28DRAFT_1290at 1305.203 kb on + strand, within EX28DRAFT_1290at 1305.234 kb on - strand, within EX28DRAFT_1290at 1305.372 kb on - strand, within EX28DRAFT_1290at 1305.399 kb on - strand, within EX28DRAFT_1290at 1305.492 kb on - strand, within EX28DRAFT_1290at 1305.551 kb on + strand, within EX28DRAFT_1290

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,302,385 + +1.5
1,302,390 - +0.2
1,302,521 - EX28DRAFT_1288 0.14 -3.4
1,302,547 + EX28DRAFT_1288 0.17 -0.8
1,302,901 - EX28DRAFT_1288 0.54 -0.9
1,302,931 + EX28DRAFT_1288 0.57 -0.2
1,302,931 + EX28DRAFT_1288 0.57 -2.9
1,303,000 + EX28DRAFT_1288 0.64 +0.1
1,303,001 - EX28DRAFT_1288 0.64 -2.7
1,303,036 - EX28DRAFT_1288 0.68 -0.4
1,303,043 - EX28DRAFT_1288 0.69 +0.4
1,303,105 + EX28DRAFT_1288 0.75 +0.0
1,303,106 - EX28DRAFT_1288 0.75 -0.1
1,303,106 - EX28DRAFT_1288 0.75 +0.5
1,303,474 - EX28DRAFT_1289 0.11 -0.4
1,303,496 + EX28DRAFT_1289 0.13 +0.1
1,303,530 + EX28DRAFT_1289 0.15 +0.1
1,303,530 + EX28DRAFT_1289 0.15 +1.5
1,303,531 - EX28DRAFT_1289 0.15 -0.1
1,303,713 + EX28DRAFT_1289 0.27 +0.5
1,304,352 + EX28DRAFT_1289 0.71 +0.3
1,304,353 - EX28DRAFT_1289 0.71 -3.1
1,304,353 - EX28DRAFT_1289 0.71 -0.5
1,304,356 + EX28DRAFT_1289 0.71 +1.4
1,304,357 - EX28DRAFT_1289 0.71 -0.6
1,304,376 + EX28DRAFT_1289 0.72 +0.7
1,304,606 + EX28DRAFT_1289 0.88 -1.3
1,304,610 + EX28DRAFT_1289 0.88 -1.9
1,304,610 + EX28DRAFT_1289 0.88 -2.0
1,304,610 + EX28DRAFT_1289 0.88 -0.2
1,304,611 - EX28DRAFT_1289 0.88 +0.8
1,304,611 - EX28DRAFT_1289 0.88 +1.1
1,304,611 - EX28DRAFT_1289 0.88 +0.9
1,304,611 - EX28DRAFT_1289 0.88 -0.0
1,304,611 - EX28DRAFT_1289 0.88 +1.1
1,304,615 + EX28DRAFT_1289 0.89 -0.2
1,304,660 + +0.6
1,304,711 + +0.8
1,304,766 + +3.2
1,304,795 + +0.1
1,304,804 - -0.7
1,305,062 + EX28DRAFT_1290 0.18 +0.7
1,305,062 + EX28DRAFT_1290 0.18 -0.8
1,305,063 - EX28DRAFT_1290 0.18 +1.2
1,305,203 + EX28DRAFT_1290 0.28 -0.1
1,305,234 - EX28DRAFT_1290 0.30 +2.7
1,305,372 - EX28DRAFT_1290 0.39 +0.2
1,305,399 - EX28DRAFT_1290 0.41 +0.1
1,305,492 - EX28DRAFT_1290 0.47 -3.7
1,305,551 + EX28DRAFT_1290 0.51 -0.1

Or see this region's nucleotide sequence