Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1285

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1284 and EX28DRAFT_1285 are separated by 11 nucleotidesEX28DRAFT_1285 and EX28DRAFT_1286 are separated by 3 nucleotides EX28DRAFT_1284: EX28DRAFT_1284 - hypothetical protein, at 1,298,630 to 1,299,706 _1284 EX28DRAFT_1285: EX28DRAFT_1285 - hypothetical protein, at 1,299,718 to 1,300,158 _1285 EX28DRAFT_1286: EX28DRAFT_1286 - hypothetical protein, at 1,300,162 to 1,301,547 _1286 Position (kb) 1299 1300 1301Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1298.773 kb on + strand, within EX28DRAFT_1284at 1298.801 kb on + strand, within EX28DRAFT_1284at 1298.910 kb on + strand, within EX28DRAFT_1284at 1298.911 kb on - strand, within EX28DRAFT_1284at 1298.911 kb on - strand, within EX28DRAFT_1284at 1298.946 kb on + strand, within EX28DRAFT_1284at 1298.946 kb on + strand, within EX28DRAFT_1284at 1298.984 kb on - strand, within EX28DRAFT_1284at 1298.984 kb on - strand, within EX28DRAFT_1284at 1299.062 kb on + strand, within EX28DRAFT_1284at 1299.124 kb on - strand, within EX28DRAFT_1284at 1299.124 kb on - strand, within EX28DRAFT_1284at 1299.157 kb on + strand, within EX28DRAFT_1284at 1299.158 kb on - strand, within EX28DRAFT_1284at 1299.159 kb on + strand, within EX28DRAFT_1284at 1299.159 kb on + strand, within EX28DRAFT_1284at 1299.159 kb on + strand, within EX28DRAFT_1284at 1299.159 kb on + strand, within EX28DRAFT_1284at 1299.160 kb on - strand, within EX28DRAFT_1284at 1299.168 kb on + strand, within EX28DRAFT_1284at 1299.260 kb on - strand, within EX28DRAFT_1284at 1299.309 kb on + strand, within EX28DRAFT_1284at 1299.355 kb on + strand, within EX28DRAFT_1284at 1299.355 kb on + strand, within EX28DRAFT_1284at 1299.505 kb on - strand, within EX28DRAFT_1284at 1299.533 kb on + strand, within EX28DRAFT_1284at 1299.723 kb on + strandat 1299.724 kb on - strandat 1299.764 kb on + strand, within EX28DRAFT_1285at 1299.764 kb on + strand, within EX28DRAFT_1285at 1299.764 kb on + strand, within EX28DRAFT_1285at 1299.764 kb on + strand, within EX28DRAFT_1285at 1299.765 kb on - strand, within EX28DRAFT_1285at 1299.781 kb on + strand, within EX28DRAFT_1285at 1299.782 kb on - strand, within EX28DRAFT_1285at 1299.782 kb on - strand, within EX28DRAFT_1285at 1299.785 kb on + strand, within EX28DRAFT_1285at 1299.860 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.975 kb on - strand, within EX28DRAFT_1285at 1299.975 kb on - strand, within EX28DRAFT_1285at 1299.982 kb on + strand, within EX28DRAFT_1285at 1299.986 kb on + strand, within EX28DRAFT_1285at 1299.987 kb on - strand, within EX28DRAFT_1285at 1299.987 kb on - strand, within EX28DRAFT_1285at 1300.136 kb on - strandat 1300.248 kb on - strandat 1300.248 kb on - strandat 1300.526 kb on + strand, within EX28DRAFT_1286at 1300.526 kb on + strand, within EX28DRAFT_1286at 1300.526 kb on + strand, within EX28DRAFT_1286at 1300.527 kb on - strand, within EX28DRAFT_1286at 1300.527 kb on - strand, within EX28DRAFT_1286at 1300.570 kb on - strand, within EX28DRAFT_1286at 1300.641 kb on - strand, within EX28DRAFT_1286at 1300.728 kb on - strand, within EX28DRAFT_1286at 1300.966 kb on - strand, within EX28DRAFT_1286

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,298,773 + EX28DRAFT_1284 0.13 +0.9
1,298,801 + EX28DRAFT_1284 0.16 -0.1
1,298,910 + EX28DRAFT_1284 0.26 +0.9
1,298,911 - EX28DRAFT_1284 0.26 +0.2
1,298,911 - EX28DRAFT_1284 0.26 -0.6
1,298,946 + EX28DRAFT_1284 0.29 -0.4
1,298,946 + EX28DRAFT_1284 0.29 +0.3
1,298,984 - EX28DRAFT_1284 0.33 +0.6
1,298,984 - EX28DRAFT_1284 0.33 -0.1
1,299,062 + EX28DRAFT_1284 0.40 -3.2
1,299,124 - EX28DRAFT_1284 0.46 -0.5
1,299,124 - EX28DRAFT_1284 0.46 +0.2
1,299,157 + EX28DRAFT_1284 0.49 -1.7
1,299,158 - EX28DRAFT_1284 0.49 -0.5
1,299,159 + EX28DRAFT_1284 0.49 +0.2
1,299,159 + EX28DRAFT_1284 0.49 -1.6
1,299,159 + EX28DRAFT_1284 0.49 +0.7
1,299,159 + EX28DRAFT_1284 0.49 +0.4
1,299,160 - EX28DRAFT_1284 0.49 -2.0
1,299,168 + EX28DRAFT_1284 0.50 +0.2
1,299,260 - EX28DRAFT_1284 0.58 +0.2
1,299,309 + EX28DRAFT_1284 0.63 +0.8
1,299,355 + EX28DRAFT_1284 0.67 +1.8
1,299,355 + EX28DRAFT_1284 0.67 -2.0
1,299,505 - EX28DRAFT_1284 0.81 +0.9
1,299,533 + EX28DRAFT_1284 0.84 -1.1
1,299,723 + -1.8
1,299,724 - -0.7
1,299,764 + EX28DRAFT_1285 0.10 +0.7
1,299,764 + EX28DRAFT_1285 0.10 +0.8
1,299,764 + EX28DRAFT_1285 0.10 -0.2
1,299,764 + EX28DRAFT_1285 0.10 +0.8
1,299,765 - EX28DRAFT_1285 0.11 +0.7
1,299,781 + EX28DRAFT_1285 0.14 -0.1
1,299,782 - EX28DRAFT_1285 0.15 -0.7
1,299,782 - EX28DRAFT_1285 0.15 -0.2
1,299,785 + EX28DRAFT_1285 0.15 +1.5
1,299,860 + EX28DRAFT_1285 0.32 +3.8
1,299,974 + EX28DRAFT_1285 0.58 +0.6
1,299,974 + EX28DRAFT_1285 0.58 +0.7
1,299,974 + EX28DRAFT_1285 0.58 -0.4
1,299,974 + EX28DRAFT_1285 0.58 -0.0
1,299,974 + EX28DRAFT_1285 0.58 +1.2
1,299,975 - EX28DRAFT_1285 0.58 +1.0
1,299,975 - EX28DRAFT_1285 0.58 +0.6
1,299,982 + EX28DRAFT_1285 0.60 +1.9
1,299,986 + EX28DRAFT_1285 0.61 +0.2
1,299,987 - EX28DRAFT_1285 0.61 -0.4
1,299,987 - EX28DRAFT_1285 0.61 +1.3
1,300,136 - +1.7
1,300,248 - +0.8
1,300,248 - -2.1
1,300,526 + EX28DRAFT_1286 0.26 -2.5
1,300,526 + EX28DRAFT_1286 0.26 -0.1
1,300,526 + EX28DRAFT_1286 0.26 -1.2
1,300,527 - EX28DRAFT_1286 0.26 +0.4
1,300,527 - EX28DRAFT_1286 0.26 -0.8
1,300,570 - EX28DRAFT_1286 0.29 +1.3
1,300,641 - EX28DRAFT_1286 0.35 +0.4
1,300,728 - EX28DRAFT_1286 0.41 +0.0
1,300,966 - EX28DRAFT_1286 0.58 -0.3

Or see this region's nucleotide sequence