Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1036 and EX28DRAFT_1037 are separated by 95 nucleotides EX28DRAFT_1037 and EX28DRAFT_1038 are separated by 3 nucleotides EX28DRAFT_1038 and EX28DRAFT_1039 overlap by 4 nucleotides
EX28DRAFT_1036: EX28DRAFT_1036 - ABC-type dipeptide transport system, periplasmic component, at 1,046,673 to 1,048,271
_1036
EX28DRAFT_1037: EX28DRAFT_1037 - Protein of unknown function (DUF2526), at 1,048,367 to 1,048,600
_1037
EX28DRAFT_1038: EX28DRAFT_1038 - Uncharacterized protein conserved in bacteria, at 1,048,604 to 1,049,053
_1038
EX28DRAFT_1039: EX28DRAFT_1039 - Sortase and related acyltransferases, at 1,049,050 to 1,049,568
_1039
Position (kb) 1048
1049 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1047.415 kb on + strand, within EX28DRAFT_1036 at 1047.547 kb on - strand, within EX28DRAFT_1036 at 1047.606 kb on - strand, within EX28DRAFT_1036 at 1047.606 kb on - strand, within EX28DRAFT_1036 at 1047.647 kb on + strand, within EX28DRAFT_1036 at 1047.689 kb on + strand, within EX28DRAFT_1036 at 1047.689 kb on + strand, within EX28DRAFT_1036 at 1047.689 kb on + strand, within EX28DRAFT_1036 at 1047.705 kb on - strand, within EX28DRAFT_1036 at 1047.720 kb on + strand, within EX28DRAFT_1036 at 1047.720 kb on + strand, within EX28DRAFT_1036 at 1047.721 kb on - strand, within EX28DRAFT_1036 at 1047.915 kb on + strand, within EX28DRAFT_1036 at 1047.916 kb on - strand, within EX28DRAFT_1036 at 1048.026 kb on - strand, within EX28DRAFT_1036 at 1048.026 kb on - strand, within EX28DRAFT_1036 at 1048.194 kb on + strand at 1048.194 kb on + strand at 1048.194 kb on + strand at 1048.195 kb on - strand at 1048.265 kb on + strand at 1048.265 kb on + strand at 1048.265 kb on + strand at 1048.266 kb on - strand at 1048.269 kb on + strand at 1048.269 kb on + strand at 1048.269 kb on + strand at 1048.270 kb on - strand at 1048.270 kb on - strand at 1048.272 kb on + strand at 1048.272 kb on + strand at 1048.306 kb on - strand at 1048.387 kb on + strand at 1048.490 kb on + strand, within EX28DRAFT_1037 at 1048.534 kb on + strand, within EX28DRAFT_1037 at 1048.910 kb on + strand, within EX28DRAFT_1038 at 1048.911 kb on - strand, within EX28DRAFT_1038 at 1048.911 kb on - strand, within EX28DRAFT_1038 at 1048.985 kb on + strand, within EX28DRAFT_1038 at 1049.009 kb on + strand at 1049.097 kb on + strand at 1049.496 kb on + strand, within EX28DRAFT_1039
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,047,415 + EX28DRAFT_1036 0.46 +1.0 1,047,547 - EX28DRAFT_1036 0.55 +2.5 1,047,606 - EX28DRAFT_1036 0.58 -2.7 1,047,606 - EX28DRAFT_1036 0.58 +1.8 1,047,647 + EX28DRAFT_1036 0.61 +1.0 1,047,689 + EX28DRAFT_1036 0.64 +0.6 1,047,689 + EX28DRAFT_1036 0.64 +0.4 1,047,689 + EX28DRAFT_1036 0.64 -0.7 1,047,705 - EX28DRAFT_1036 0.65 +1.2 1,047,720 + EX28DRAFT_1036 0.65 +0.1 1,047,720 + EX28DRAFT_1036 0.65 +0.5 1,047,721 - EX28DRAFT_1036 0.66 -2.0 1,047,915 + EX28DRAFT_1036 0.78 -1.0 1,047,916 - EX28DRAFT_1036 0.78 -0.6 1,048,026 - EX28DRAFT_1036 0.85 -0.6 1,048,026 - EX28DRAFT_1036 0.85 +0.7 1,048,194 + +1.1 1,048,194 + -0.0 1,048,194 + +0.7 1,048,195 - -1.0 1,048,265 + -1.0 1,048,265 + -0.2 1,048,265 + -0.2 1,048,266 - -0.6 1,048,269 + -0.4 1,048,269 + -0.5 1,048,269 + -1.3 1,048,270 - +2.6 1,048,270 - +1.1 1,048,272 + -1.4 1,048,272 + -0.8 1,048,306 - -3.2 1,048,387 + -0.5 1,048,490 + EX28DRAFT_1037 0.53 -3.1 1,048,534 + EX28DRAFT_1037 0.71 -0.1 1,048,910 + EX28DRAFT_1038 0.68 -2.1 1,048,911 - EX28DRAFT_1038 0.68 +1.4 1,048,911 - EX28DRAFT_1038 0.68 -0.5 1,048,985 + EX28DRAFT_1038 0.85 +2.2 1,049,009 + -0.9 1,049,097 + +0.1 1,049,496 + EX28DRAFT_1039 0.86 -0.2
Or see this region's nucleotide sequence