Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0828

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0826 and EX28DRAFT_0827 are separated by 125 nucleotidesEX28DRAFT_0827 and EX28DRAFT_0828 overlap by 4 nucleotidesEX28DRAFT_0828 and EX28DRAFT_0829 are separated by 201 nucleotides EX28DRAFT_0826: EX28DRAFT_0826 - ribose-phosphate pyrophosphokinase, at 830,540 to 831,487 _0826 EX28DRAFT_0827: EX28DRAFT_0827 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 831,613 to 832,482 _0827 EX28DRAFT_0828: EX28DRAFT_0828 - outer membrane lipoprotein LolB, at 832,479 to 833,090 _0828 EX28DRAFT_0829: EX28DRAFT_0829 - glutamyl-tRNA reductase (EC 1.2.1.70), at 833,292 to 834,548 _0829 Position (kb) 832 833 834Strain fitness (log2 ratio) -1 0 1at 833.113 kb on - strandat 833.113 kb on - strandat 833.113 kb on - strandat 833.194 kb on + strandat 833.222 kb on + strandat 833.223 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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833,113 - +0.6
833,113 - -0.4
833,113 - -0.7
833,194 + -1.2
833,222 + -0.6
833,223 - -0.5

Or see this region's nucleotide sequence