Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0825 and EX28DRAFT_0826 are separated by 124 nucleotides EX28DRAFT_0826 and EX28DRAFT_0827 are separated by 125 nucleotides EX28DRAFT_0827 and EX28DRAFT_0828 overlap by 4 nucleotides
EX28DRAFT_0825: EX28DRAFT_0825 - high affinity sulphate transporter 1, at 828,736 to 830,415
_0825
EX28DRAFT_0826: EX28DRAFT_0826 - ribose-phosphate pyrophosphokinase, at 830,540 to 831,487
_0826
EX28DRAFT_0827: EX28DRAFT_0827 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 831,613 to 832,482
_0827
EX28DRAFT_0828: EX28DRAFT_0828 - outer membrane lipoprotein LolB, at 832,479 to 833,090
_0828
Position (kb) 830
831
832 Strain fitness (log2 ratio) -2
-1
0
1 at 829.563 kb on + strand, within EX28DRAFT_0825 at 829.701 kb on - strand, within EX28DRAFT_0825 at 829.744 kb on - strand, within EX28DRAFT_0825 at 829.916 kb on + strand, within EX28DRAFT_0825 at 829.980 kb on + strand, within EX28DRAFT_0825 at 829.983 kb on + strand, within EX28DRAFT_0825 at 829.983 kb on + strand, within EX28DRAFT_0825 at 829.983 kb on + strand, within EX28DRAFT_0825 at 830.025 kb on + strand, within EX28DRAFT_0825 at 830.026 kb on - strand, within EX28DRAFT_0825 at 830.027 kb on + strand, within EX28DRAFT_0825 at 830.027 kb on + strand, within EX28DRAFT_0825 at 830.028 kb on - strand, within EX28DRAFT_0825 at 830.345 kb on + strand at 830.419 kb on + strand at 830.420 kb on - strand at 830.423 kb on + strand at 830.424 kb on - strand at 830.433 kb on - strand at 830.482 kb on - strand at 830.482 kb on - strand at 830.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 829,563 + EX28DRAFT_0825 0.49 -0.1 829,701 - EX28DRAFT_0825 0.57 +1.2 829,744 - EX28DRAFT_0825 0.60 -0.9 829,916 + EX28DRAFT_0825 0.70 -0.6 829,980 + EX28DRAFT_0825 0.74 +1.7 829,983 + EX28DRAFT_0825 0.74 -0.1 829,983 + EX28DRAFT_0825 0.74 +0.7 829,983 + EX28DRAFT_0825 0.74 -0.5 830,025 + EX28DRAFT_0825 0.77 -0.6 830,026 - EX28DRAFT_0825 0.77 -1.5 830,027 + EX28DRAFT_0825 0.77 -0.5 830,027 + EX28DRAFT_0825 0.77 -0.2 830,028 - EX28DRAFT_0825 0.77 -2.2 830,345 + -0.2 830,419 + -0.4 830,420 - +1.7 830,423 + +1.4 830,424 - +1.0 830,433 - -1.9 830,482 - -2.6 830,482 - +0.5 830,482 - +0.4
Or see this region's nucleotide sequence