Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0766

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0765 and EX28DRAFT_0766 are separated by 321 nucleotidesEX28DRAFT_0766 and EX28DRAFT_0767 are separated by 9 nucleotides EX28DRAFT_0765: EX28DRAFT_0765 - Uncharacterized conserved protein, at 760,738 to 762,270 _0765 EX28DRAFT_0766: EX28DRAFT_0766 - Glycine/D-amino acid oxidases (deaminating), at 762,592 to 763,890 _0766 EX28DRAFT_0767: EX28DRAFT_0767 - alanine racemase, at 763,900 to 764,970 _0767 Position (kb) 762 763 764Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 761.648 kb on + strand, within EX28DRAFT_0765at 761.649 kb on - strand, within EX28DRAFT_0765at 761.712 kb on - strand, within EX28DRAFT_0765at 761.800 kb on - strand, within EX28DRAFT_0765at 761.804 kb on + strand, within EX28DRAFT_0765at 761.804 kb on + strand, within EX28DRAFT_0765at 761.804 kb on + strand, within EX28DRAFT_0765at 761.805 kb on - strand, within EX28DRAFT_0765at 761.867 kb on + strand, within EX28DRAFT_0765at 761.872 kb on - strand, within EX28DRAFT_0765at 761.950 kb on + strand, within EX28DRAFT_0765at 761.950 kb on + strand, within EX28DRAFT_0765at 761.951 kb on - strand, within EX28DRAFT_0765at 761.955 kb on - strand, within EX28DRAFT_0765at 761.977 kb on - strand, within EX28DRAFT_0765at 761.990 kb on + strand, within EX28DRAFT_0765at 762.015 kb on + strand, within EX28DRAFT_0765at 762.015 kb on + strand, within EX28DRAFT_0765at 762.015 kb on + strand, within EX28DRAFT_0765at 762.016 kb on - strand, within EX28DRAFT_0765at 762.016 kb on - strand, within EX28DRAFT_0765at 762.016 kb on - strand, within EX28DRAFT_0765at 762.017 kb on + strand, within EX28DRAFT_0765at 762.018 kb on - strand, within EX28DRAFT_0765at 762.018 kb on - strand, within EX28DRAFT_0765at 762.018 kb on - strand, within EX28DRAFT_0765at 762.018 kb on - strand, within EX28DRAFT_0765at 762.018 kb on - strand, within EX28DRAFT_0765at 762.069 kb on + strand, within EX28DRAFT_0765at 762.069 kb on + strand, within EX28DRAFT_0765at 762.070 kb on - strand, within EX28DRAFT_0765at 762.070 kb on - strand, within EX28DRAFT_0765at 762.070 kb on - strand, within EX28DRAFT_0765at 762.117 kb on + strandat 762.118 kb on - strandat 762.145 kb on - strandat 762.189 kb on - strandat 762.325 kb on + strandat 762.325 kb on + strandat 762.325 kb on + strandat 762.495 kb on + strandat 762.495 kb on + strandat 762.579 kb on + strandat 762.579 kb on + strandat 762.605 kb on + strandat 762.606 kb on - strandat 762.644 kb on - strandat 762.644 kb on - strandat 762.647 kb on + strandat 762.647 kb on + strandat 762.647 kb on + strandat 762.647 kb on + strandat 762.648 kb on - strandat 762.648 kb on - strandat 762.668 kb on + strandat 762.893 kb on - strand, within EX28DRAFT_0766at 762.931 kb on + strand, within EX28DRAFT_0766at 763.143 kb on + strand, within EX28DRAFT_0766at 763.201 kb on - strand, within EX28DRAFT_0766at 763.336 kb on + strand, within EX28DRAFT_0766at 763.337 kb on - strand, within EX28DRAFT_0766at 763.481 kb on - strand, within EX28DRAFT_0766at 763.849 kb on - strandat 763.884 kb on + strandat 763.889 kb on - strandat 763.889 kb on - strandat 764.008 kb on - strand, within EX28DRAFT_0767at 764.008 kb on - strand, within EX28DRAFT_0767at 764.180 kb on - strand, within EX28DRAFT_0767at 764.180 kb on - strand, within EX28DRAFT_0767at 764.257 kb on - strand, within EX28DRAFT_0767at 764.260 kb on + strand, within EX28DRAFT_0767at 764.260 kb on + strand, within EX28DRAFT_0767at 764.260 kb on + strand, within EX28DRAFT_0767at 764.260 kb on + strand, within EX28DRAFT_0767at 764.261 kb on - strand, within EX28DRAFT_0767at 764.261 kb on - strand, within EX28DRAFT_0767at 764.261 kb on - strand, within EX28DRAFT_0767at 764.261 kb on - strand, within EX28DRAFT_0767at 764.316 kb on + strand, within EX28DRAFT_0767at 764.404 kb on - strand, within EX28DRAFT_0767at 764.506 kb on + strand, within EX28DRAFT_0767at 764.508 kb on + strand, within EX28DRAFT_0767at 764.536 kb on + strand, within EX28DRAFT_0767at 764.536 kb on + strand, within EX28DRAFT_0767at 764.795 kb on + strand, within EX28DRAFT_0767at 764.795 kb on + strand, within EX28DRAFT_0767at 764.795 kb on + strand, within EX28DRAFT_0767at 764.796 kb on - strand, within EX28DRAFT_0767at 764.799 kb on + strand, within EX28DRAFT_0767at 764.799 kb on + strand, within EX28DRAFT_0767at 764.806 kb on - strand, within EX28DRAFT_0767

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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761,648 + EX28DRAFT_0765 0.59 +0.4
761,649 - EX28DRAFT_0765 0.59 -1.0
761,712 - EX28DRAFT_0765 0.64 +0.0
761,800 - EX28DRAFT_0765 0.69 -0.4
761,804 + EX28DRAFT_0765 0.70 -1.8
761,804 + EX28DRAFT_0765 0.70 +0.3
761,804 + EX28DRAFT_0765 0.70 +0.0
761,805 - EX28DRAFT_0765 0.70 +0.7
761,867 + EX28DRAFT_0765 0.74 +0.8
761,872 - EX28DRAFT_0765 0.74 -0.2
761,950 + EX28DRAFT_0765 0.79 +1.2
761,950 + EX28DRAFT_0765 0.79 -0.1
761,951 - EX28DRAFT_0765 0.79 +1.0
761,955 - EX28DRAFT_0765 0.79 -0.4
761,977 - EX28DRAFT_0765 0.81 +0.3
761,990 + EX28DRAFT_0765 0.82 +0.5
762,015 + EX28DRAFT_0765 0.83 -1.4
762,015 + EX28DRAFT_0765 0.83 +0.3
762,015 + EX28DRAFT_0765 0.83 +0.1
762,016 - EX28DRAFT_0765 0.83 +1.1
762,016 - EX28DRAFT_0765 0.83 -2.6
762,016 - EX28DRAFT_0765 0.83 +1.9
762,017 + EX28DRAFT_0765 0.83 -0.0
762,018 - EX28DRAFT_0765 0.83 -0.3
762,018 - EX28DRAFT_0765 0.83 -0.3
762,018 - EX28DRAFT_0765 0.83 -1.5
762,018 - EX28DRAFT_0765 0.83 +3.0
762,018 - EX28DRAFT_0765 0.83 +3.3
762,069 + EX28DRAFT_0765 0.87 -2.3
762,069 + EX28DRAFT_0765 0.87 +0.4
762,070 - EX28DRAFT_0765 0.87 -0.3
762,070 - EX28DRAFT_0765 0.87 +1.3
762,070 - EX28DRAFT_0765 0.87 +2.0
762,117 + +0.1
762,118 - +0.0
762,145 - -1.2
762,189 - +0.1
762,325 + +0.9
762,325 + +0.4
762,325 + -0.2
762,495 + -0.4
762,495 + +2.1
762,579 + -0.1
762,579 + +0.4
762,605 + -1.1
762,606 - -1.4
762,644 - +2.4
762,644 - -1.2
762,647 + -0.3
762,647 + -2.5
762,647 + +0.3
762,647 + +0.1
762,648 - -1.8
762,648 - -2.1
762,668 + +0.5
762,893 - EX28DRAFT_0766 0.23 +0.7
762,931 + EX28DRAFT_0766 0.26 -1.8
763,143 + EX28DRAFT_0766 0.42 +0.1
763,201 - EX28DRAFT_0766 0.47 -0.6
763,336 + EX28DRAFT_0766 0.57 +0.6
763,337 - EX28DRAFT_0766 0.57 -0.3
763,481 - EX28DRAFT_0766 0.68 -1.0
763,849 - -0.4
763,884 + +1.1
763,889 - -0.3
763,889 - +1.3
764,008 - EX28DRAFT_0767 0.10 +1.0
764,008 - EX28DRAFT_0767 0.10 -0.5
764,180 - EX28DRAFT_0767 0.26 +0.7
764,180 - EX28DRAFT_0767 0.26 +0.6
764,257 - EX28DRAFT_0767 0.33 -1.8
764,260 + EX28DRAFT_0767 0.34 +1.1
764,260 + EX28DRAFT_0767 0.34 +1.8
764,260 + EX28DRAFT_0767 0.34 -2.0
764,260 + EX28DRAFT_0767 0.34 -0.0
764,261 - EX28DRAFT_0767 0.34 -0.1
764,261 - EX28DRAFT_0767 0.34 -0.7
764,261 - EX28DRAFT_0767 0.34 +1.9
764,261 - EX28DRAFT_0767 0.34 +1.4
764,316 + EX28DRAFT_0767 0.39 +0.8
764,404 - EX28DRAFT_0767 0.47 -0.6
764,506 + EX28DRAFT_0767 0.57 -0.4
764,508 + EX28DRAFT_0767 0.57 -0.7
764,536 + EX28DRAFT_0767 0.59 -1.0
764,536 + EX28DRAFT_0767 0.59 -1.5
764,795 + EX28DRAFT_0767 0.84 -0.3
764,795 + EX28DRAFT_0767 0.84 +0.1
764,795 + EX28DRAFT_0767 0.84 -0.3
764,796 - EX28DRAFT_0767 0.84 -0.8
764,799 + EX28DRAFT_0767 0.84 +2.5
764,799 + EX28DRAFT_0767 0.84 -1.6
764,806 - EX28DRAFT_0767 0.85 -3.2

Or see this region's nucleotide sequence