Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0750 and EX28DRAFT_0751 are separated by 66 nucleotides EX28DRAFT_0751 and EX28DRAFT_0752 are separated by 37 nucleotides EX28DRAFT_0752 and EX28DRAFT_0753 are separated by 170 nucleotides
EX28DRAFT_0750: EX28DRAFT_0750 - Rad3-related DNA helicases, at 747,501 to 749,411
_0750
EX28DRAFT_0751: EX28DRAFT_0751 - tRNA threonylcarbamoyl adenosine modification protein YeaZ, at 749,478 to 750,173
_0751
EX28DRAFT_0752: EX28DRAFT_0752 - outer membrane lipoprotein, Slp family, at 750,211 to 750,792
_0752
EX28DRAFT_0753: EX28DRAFT_0753 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 750,963 to 752,681
_0753
Position (kb) 750
751 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 749.225 kb on + strand at 749.368 kb on + strand at 749.368 kb on + strand at 749.410 kb on - strand at 749.410 kb on - strand at 750.230 kb on + strand at 750.230 kb on + strand at 750.230 kb on + strand at 750.231 kb on - strand at 750.231 kb on - strand at 750.231 kb on - strand at 750.231 kb on - strand at 750.234 kb on - strand at 750.300 kb on + strand, within EX28DRAFT_0752 at 750.498 kb on + strand, within EX28DRAFT_0752 at 750.498 kb on + strand, within EX28DRAFT_0752 at 750.502 kb on + strand, within EX28DRAFT_0752 at 750.640 kb on + strand, within EX28DRAFT_0752 at 750.748 kb on + strand at 750.749 kb on - strand at 750.796 kb on - strand at 750.904 kb on - strand at 751.167 kb on - strand, within EX28DRAFT_0753 at 751.276 kb on + strand, within EX28DRAFT_0753 at 751.276 kb on + strand, within EX28DRAFT_0753 at 751.317 kb on + strand, within EX28DRAFT_0753 at 751.318 kb on - strand, within EX28DRAFT_0753 at 751.318 kb on - strand, within EX28DRAFT_0753 at 751.503 kb on + strand, within EX28DRAFT_0753 at 751.503 kb on + strand, within EX28DRAFT_0753 at 751.504 kb on - strand, within EX28DRAFT_0753 at 751.528 kb on - strand, within EX28DRAFT_0753 at 751.528 kb on - strand, within EX28DRAFT_0753 at 751.580 kb on + strand, within EX28DRAFT_0753 at 751.587 kb on + strand, within EX28DRAFT_0753 at 751.588 kb on - strand, within EX28DRAFT_0753 at 751.633 kb on - strand, within EX28DRAFT_0753 at 751.686 kb on - strand, within EX28DRAFT_0753 at 751.720 kb on - strand, within EX28DRAFT_0753 at 751.772 kb on - strand, within EX28DRAFT_0753 at 751.772 kb on - strand, within EX28DRAFT_0753 at 751.772 kb on - strand, within EX28DRAFT_0753
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 749,225 + +0.8 749,368 + +1.1 749,368 + -1.1 749,410 - -0.9 749,410 - -0.2 750,230 + -1.7 750,230 + +1.1 750,230 + -1.1 750,231 - +0.2 750,231 - -1.1 750,231 - -0.7 750,231 - -0.1 750,234 - -0.5 750,300 + EX28DRAFT_0752 0.15 -3.2 750,498 + EX28DRAFT_0752 0.49 -2.4 750,498 + EX28DRAFT_0752 0.49 -1.3 750,502 + EX28DRAFT_0752 0.50 -0.3 750,640 + EX28DRAFT_0752 0.74 +0.9 750,748 + -0.0 750,749 - +0.2 750,796 - -0.7 750,904 - -1.4 751,167 - EX28DRAFT_0753 0.12 -2.0 751,276 + EX28DRAFT_0753 0.18 +0.6 751,276 + EX28DRAFT_0753 0.18 -1.7 751,317 + EX28DRAFT_0753 0.21 -0.9 751,318 - EX28DRAFT_0753 0.21 +0.8 751,318 - EX28DRAFT_0753 0.21 +0.9 751,503 + EX28DRAFT_0753 0.31 +0.4 751,503 + EX28DRAFT_0753 0.31 -0.6 751,504 - EX28DRAFT_0753 0.31 -0.3 751,528 - EX28DRAFT_0753 0.33 -1.3 751,528 - EX28DRAFT_0753 0.33 +0.7 751,580 + EX28DRAFT_0753 0.36 +0.9 751,587 + EX28DRAFT_0753 0.36 +0.3 751,588 - EX28DRAFT_0753 0.36 +2.3 751,633 - EX28DRAFT_0753 0.39 +1.7 751,686 - EX28DRAFT_0753 0.42 -3.1 751,720 - EX28DRAFT_0753 0.44 +1.9 751,772 - EX28DRAFT_0753 0.47 +0.3 751,772 - EX28DRAFT_0753 0.47 -0.3 751,772 - EX28DRAFT_0753 0.47 -1.7
Or see this region's nucleotide sequence