Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0697 and EX28DRAFT_0698 overlap by 4 nucleotides EX28DRAFT_0698 and EX28DRAFT_0699 are separated by 62 nucleotides EX28DRAFT_0699 and EX28DRAFT_0700 are separated by 15 nucleotides
EX28DRAFT_0697: EX28DRAFT_0697 - ABC-type Mn2+/Zn2+ transport systems, permease components, at 694,056 to 694,841
_0697
EX28DRAFT_0698: EX28DRAFT_0698 - ABC-type Mn/Zn transport systems, ATPase component, at 694,838 to 695,593
_0698
EX28DRAFT_0699: EX28DRAFT_0699 - ABC-type Zn2+ transport system, periplasmic component/surface adhesin, at 695,656 to 696,615
_0699
EX28DRAFT_0700: EX28DRAFT_0700 - Membrane proteins related to metalloendopeptidases, at 696,631 to 697,950
_0700
Position (kb) 695
696
697 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 694.670 kb on - strand, within EX28DRAFT_0697 at 694.803 kb on - strand at 694.803 kb on - strand at 694.912 kb on - strand at 694.912 kb on - strand at 694.955 kb on - strand, within EX28DRAFT_0698 at 695.003 kb on - strand, within EX28DRAFT_0698 at 695.003 kb on - strand, within EX28DRAFT_0698 at 695.042 kb on + strand, within EX28DRAFT_0698 at 695.096 kb on + strand, within EX28DRAFT_0698 at 695.096 kb on + strand, within EX28DRAFT_0698 at 695.096 kb on + strand, within EX28DRAFT_0698 at 695.116 kb on - strand, within EX28DRAFT_0698 at 695.204 kb on + strand, within EX28DRAFT_0698 at 695.204 kb on + strand, within EX28DRAFT_0698 at 695.204 kb on + strand, within EX28DRAFT_0698 at 695.204 kb on + strand, within EX28DRAFT_0698 at 695.410 kb on + strand, within EX28DRAFT_0698 at 695.628 kb on + strand at 695.629 kb on - strand at 695.629 kb on - strand at 695.675 kb on + strand at 695.724 kb on + strand at 695.900 kb on + strand, within EX28DRAFT_0699 at 695.900 kb on + strand, within EX28DRAFT_0699 at 696.101 kb on - strand, within EX28DRAFT_0699 at 696.101 kb on - strand, within EX28DRAFT_0699 at 696.131 kb on + strand, within EX28DRAFT_0699 at 696.200 kb on + strand, within EX28DRAFT_0699 at 696.233 kb on + strand, within EX28DRAFT_0699 at 696.283 kb on - strand, within EX28DRAFT_0699 at 696.557 kb on - strand at 696.628 kb on + strand at 696.629 kb on - strand at 696.666 kb on + strand at 696.746 kb on - strand at 696.752 kb on - strand at 696.922 kb on + strand, within EX28DRAFT_0700 at 696.922 kb on + strand, within EX28DRAFT_0700 at 696.922 kb on + strand, within EX28DRAFT_0700 at 696.923 kb on - strand, within EX28DRAFT_0700 at 696.985 kb on - strand, within EX28DRAFT_0700
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 694,670 - EX28DRAFT_0697 0.78 -3.3 694,803 - -0.8 694,803 - -0.2 694,912 - -0.7 694,912 - +0.1 694,955 - EX28DRAFT_0698 0.15 +2.3 695,003 - EX28DRAFT_0698 0.22 +0.9 695,003 - EX28DRAFT_0698 0.22 -1.6 695,042 + EX28DRAFT_0698 0.27 +0.4 695,096 + EX28DRAFT_0698 0.34 -0.2 695,096 + EX28DRAFT_0698 0.34 +0.1 695,096 + EX28DRAFT_0698 0.34 -0.9 695,116 - EX28DRAFT_0698 0.37 +0.7 695,204 + EX28DRAFT_0698 0.48 -0.8 695,204 + EX28DRAFT_0698 0.48 +0.2 695,204 + EX28DRAFT_0698 0.48 -0.9 695,204 + EX28DRAFT_0698 0.48 -1.3 695,410 + EX28DRAFT_0698 0.76 -1.1 695,628 + -1.6 695,629 - -0.9 695,629 - +0.0 695,675 + -0.9 695,724 + +0.8 695,900 + EX28DRAFT_0699 0.25 -0.8 695,900 + EX28DRAFT_0699 0.25 -0.2 696,101 - EX28DRAFT_0699 0.46 +0.9 696,101 - EX28DRAFT_0699 0.46 -1.7 696,131 + EX28DRAFT_0699 0.49 -0.7 696,200 + EX28DRAFT_0699 0.57 -1.3 696,233 + EX28DRAFT_0699 0.60 +1.3 696,283 - EX28DRAFT_0699 0.65 -2.0 696,557 - +1.4 696,628 + +4.4 696,629 - -0.5 696,666 + +1.2 696,746 - +0.1 696,752 - +0.5 696,922 + EX28DRAFT_0700 0.22 +0.3 696,922 + EX28DRAFT_0700 0.22 -1.6 696,922 + EX28DRAFT_0700 0.22 +1.1 696,923 - EX28DRAFT_0700 0.22 +0.2 696,985 - EX28DRAFT_0700 0.27 +0.4
Or see this region's nucleotide sequence