Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0665 and EX28DRAFT_0666 are separated by 57 nucleotides EX28DRAFT_0666 and EX28DRAFT_0667 are separated by 16 nucleotides EX28DRAFT_0667 and EX28DRAFT_0668 overlap by 25 nucleotides
EX28DRAFT_0665: EX28DRAFT_0665 - Uncharacterized secreted protein, at 660,384 to 660,956
_0665
EX28DRAFT_0666: EX28DRAFT_0666 - Uncharacterized secreted protein, at 661,014 to 661,517
_0666
EX28DRAFT_0667: EX28DRAFT_0667 - P pilus assembly protein, chaperone PapD, at 661,534 to 662,289
_0667
EX28DRAFT_0668: EX28DRAFT_0668 - P pilus assembly protein, porin PapC, at 662,265 to 664,649
_0668
Position (kb) 661
662 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 660.149 kb on - strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.231 kb on - strand at 660.278 kb on + strand at 660.382 kb on - strand at 660.540 kb on - strand, within EX28DRAFT_0665 at 660.591 kb on - strand, within EX28DRAFT_0665 at 660.591 kb on - strand, within EX28DRAFT_0665 at 660.591 kb on - strand, within EX28DRAFT_0665 at 660.654 kb on + strand, within EX28DRAFT_0665 at 660.654 kb on + strand, within EX28DRAFT_0665 at 660.654 kb on + strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.656 kb on + strand, within EX28DRAFT_0665 at 660.657 kb on - strand, within EX28DRAFT_0665 at 660.658 kb on - strand, within EX28DRAFT_0665 at 660.781 kb on - strand, within EX28DRAFT_0665 at 660.861 kb on + strand, within EX28DRAFT_0665 at 660.921 kb on + strand at 660.952 kb on - strand at 660.952 kb on - strand at 660.955 kb on - strand at 661.268 kb on + strand, within EX28DRAFT_0666 at 661.408 kb on - strand, within EX28DRAFT_0666 at 661.409 kb on + strand, within EX28DRAFT_0666 at 661.515 kb on + strand at 661.519 kb on - strand at 661.754 kb on - strand, within EX28DRAFT_0667 at 661.755 kb on + strand, within EX28DRAFT_0667 at 661.756 kb on - strand, within EX28DRAFT_0667 at 661.878 kb on + strand, within EX28DRAFT_0667 at 661.991 kb on + strand, within EX28DRAFT_0667 at 661.992 kb on - strand, within EX28DRAFT_0667 at 662.248 kb on - strand at 662.305 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 660,149 - -1.7 660,230 + -0.4 660,230 + -0.4 660,230 + +0.1 660,230 + +0.0 660,230 + -5.1 660,231 - -0.7 660,278 + -1.0 660,382 - -1.7 660,540 - EX28DRAFT_0665 0.27 +0.0 660,591 - EX28DRAFT_0665 0.36 +1.0 660,591 - EX28DRAFT_0665 0.36 +0.2 660,591 - EX28DRAFT_0665 0.36 +1.8 660,654 + EX28DRAFT_0665 0.47 +4.6 660,654 + EX28DRAFT_0665 0.47 +1.5 660,654 + EX28DRAFT_0665 0.47 +0.4 660,655 - EX28DRAFT_0665 0.47 -0.8 660,655 - EX28DRAFT_0665 0.47 +0.0 660,655 - EX28DRAFT_0665 0.47 -0.2 660,655 - EX28DRAFT_0665 0.47 -0.6 660,656 + EX28DRAFT_0665 0.47 +0.1 660,657 - EX28DRAFT_0665 0.48 +0.6 660,658 - EX28DRAFT_0665 0.48 -2.6 660,781 - EX28DRAFT_0665 0.69 +0.4 660,861 + EX28DRAFT_0665 0.83 +0.6 660,921 + +1.4 660,952 - +0.2 660,952 - -2.0 660,955 - +1.2 661,268 + EX28DRAFT_0666 0.50 -2.4 661,408 - EX28DRAFT_0666 0.78 -1.3 661,409 + EX28DRAFT_0666 0.78 -0.8 661,515 + -0.0 661,519 - -0.0 661,754 - EX28DRAFT_0667 0.29 +1.0 661,755 + EX28DRAFT_0667 0.29 -2.6 661,756 - EX28DRAFT_0667 0.29 -1.0 661,878 + EX28DRAFT_0667 0.46 -0.3 661,991 + EX28DRAFT_0667 0.60 +0.3 661,992 - EX28DRAFT_0667 0.61 -0.4 662,248 - +0.3 662,305 + -0.1
Or see this region's nucleotide sequence