Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0634 and EX28DRAFT_0635 are separated by 56 nucleotides EX28DRAFT_0635 and EX28DRAFT_0636 are separated by 152 nucleotides EX28DRAFT_0636 and EX28DRAFT_0637 are separated by 46 nucleotides EX28DRAFT_0637 and EX28DRAFT_0638 are separated by 11 nucleotides EX28DRAFT_0638 and EX28DRAFT_0639 are separated by 82 nucleotides
EX28DRAFT_0634: EX28DRAFT_0634 - Excinuclease ABC subunit C, at 630,057 to 631,889
_0634
EX28DRAFT_0635: EX28DRAFT_0635 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 631,946 to 632,494
_0635
EX28DRAFT_0636: EX28DRAFT_0636 - tRNA, at 632,647 to 632,722
_0636
EX28DRAFT_0637: EX28DRAFT_0637 - tRNA, at 632,769 to 632,842
_0637
EX28DRAFT_0638: EX28DRAFT_0638 - tRNA, at 632,854 to 632,940
_0638
EX28DRAFT_0639: EX28DRAFT_0639 - ABC-type branched-chain amino acid transport systems, ATPase component, at 633,023 to 633,739
_0639
Position (kb) 631
632
633 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 631.085 kb on - strand, within EX28DRAFT_0634 at 631.116 kb on + strand, within EX28DRAFT_0634 at 631.238 kb on + strand, within EX28DRAFT_0634 at 631.238 kb on + strand, within EX28DRAFT_0634 at 631.239 kb on - strand, within EX28DRAFT_0634 at 631.239 kb on - strand, within EX28DRAFT_0634 at 631.239 kb on - strand, within EX28DRAFT_0634 at 631.239 kb on - strand, within EX28DRAFT_0634 at 631.298 kb on - strand, within EX28DRAFT_0634 at 631.340 kb on + strand, within EX28DRAFT_0634 at 631.340 kb on + strand, within EX28DRAFT_0634 at 631.341 kb on - strand, within EX28DRAFT_0634 at 631.341 kb on - strand, within EX28DRAFT_0634 at 631.410 kb on - strand, within EX28DRAFT_0634 at 631.410 kb on - strand, within EX28DRAFT_0634 at 631.418 kb on - strand, within EX28DRAFT_0634 at 631.653 kb on - strand, within EX28DRAFT_0634 at 631.779 kb on + strand at 631.779 kb on + strand at 631.780 kb on - strand at 631.869 kb on + strand at 631.870 kb on - strand at 631.906 kb on + strand at 632.967 kb on + strand at 632.967 kb on + strand at 633.118 kb on - strand, within EX28DRAFT_0639 at 633.118 kb on - strand, within EX28DRAFT_0639 at 633.118 kb on - strand, within EX28DRAFT_0639
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 631,085 - EX28DRAFT_0634 0.56 -1.9 631,116 + EX28DRAFT_0634 0.58 +0.3 631,238 + EX28DRAFT_0634 0.64 +0.0 631,238 + EX28DRAFT_0634 0.64 +0.0 631,239 - EX28DRAFT_0634 0.64 -0.1 631,239 - EX28DRAFT_0634 0.64 +0.6 631,239 - EX28DRAFT_0634 0.64 +0.2 631,239 - EX28DRAFT_0634 0.64 -2.5 631,298 - EX28DRAFT_0634 0.68 -0.5 631,340 + EX28DRAFT_0634 0.70 -0.7 631,340 + EX28DRAFT_0634 0.70 +1.5 631,341 - EX28DRAFT_0634 0.70 -0.3 631,341 - EX28DRAFT_0634 0.70 -1.4 631,410 - EX28DRAFT_0634 0.74 -0.7 631,410 - EX28DRAFT_0634 0.74 -1.8 631,418 - EX28DRAFT_0634 0.74 -1.2 631,653 - EX28DRAFT_0634 0.87 +0.4 631,779 + +0.3 631,779 + +1.1 631,780 - -0.6 631,869 + +0.9 631,870 - +1.2 631,906 + -0.4 632,967 + +0.1 632,967 + +1.0 633,118 - EX28DRAFT_0639 0.13 +1.8 633,118 - EX28DRAFT_0639 0.13 +3.4 633,118 - EX28DRAFT_0639 0.13 +0.4
Or see this region's nucleotide sequence