Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0560 and EX28DRAFT_0561 are separated by 496 nucleotides EX28DRAFT_0561 and EX28DRAFT_0562 are separated by 47 nucleotides
EX28DRAFT_0560: EX28DRAFT_0560 - RND family efflux transporter, MFP subunit, at 556,000 to 556,986
_0560
EX28DRAFT_0561: EX28DRAFT_0561 - Universal stress protein UspA and related nucleotide-binding proteins, at 557,483 to 557,914
_0561
EX28DRAFT_0562: EX28DRAFT_0562 - ATPase, P-type (transporting), HAD superfamily, subfamily IC, at 557,962 to 560,655
_0562
Position (kb) 557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 556.570 kb on + strand, within EX28DRAFT_0560 at 556.571 kb on - strand, within EX28DRAFT_0560 at 556.639 kb on + strand, within EX28DRAFT_0560 at 556.640 kb on - strand, within EX28DRAFT_0560 at 556.991 kb on - strand at 557.089 kb on - strand at 557.145 kb on + strand at 557.145 kb on + strand at 557.170 kb on + strand at 557.171 kb on - strand at 557.172 kb on + strand at 557.173 kb on - strand at 557.173 kb on - strand at 557.177 kb on - strand at 557.225 kb on - strand at 557.243 kb on + strand at 557.251 kb on - strand at 557.254 kb on + strand at 557.254 kb on + strand at 557.254 kb on + strand at 557.254 kb on + strand at 557.254 kb on + strand at 557.254 kb on + strand at 557.255 kb on - strand at 557.255 kb on - strand at 557.255 kb on - strand at 557.255 kb on - strand at 557.289 kb on - strand at 557.289 kb on - strand at 557.296 kb on + strand at 557.375 kb on + strand at 557.482 kb on + strand at 557.483 kb on - strand at 557.516 kb on + strand at 557.666 kb on + strand, within EX28DRAFT_0561 at 557.777 kb on - strand, within EX28DRAFT_0561 at 557.989 kb on + strand at 558.147 kb on + strand at 558.148 kb on - strand at 558.156 kb on - strand at 558.163 kb on + strand at 558.164 kb on - strand at 558.212 kb on + strand at 558.310 kb on - strand, within EX28DRAFT_0562 at 558.387 kb on + strand, within EX28DRAFT_0562 at 558.387 kb on + strand, within EX28DRAFT_0562 at 558.387 kb on + strand, within EX28DRAFT_0562 at 558.414 kb on + strand, within EX28DRAFT_0562 at 558.545 kb on - strand, within EX28DRAFT_0562 at 558.546 kb on + strand, within EX28DRAFT_0562 at 558.547 kb on - strand, within EX28DRAFT_0562 at 558.568 kb on - strand, within EX28DRAFT_0562 at 558.693 kb on + strand, within EX28DRAFT_0562 at 558.772 kb on - strand, within EX28DRAFT_0562 at 558.801 kb on + strand, within EX28DRAFT_0562 at 558.801 kb on + strand, within EX28DRAFT_0562
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 556,570 + EX28DRAFT_0560 0.58 -0.6 556,571 - EX28DRAFT_0560 0.58 -0.4 556,639 + EX28DRAFT_0560 0.65 +0.3 556,640 - EX28DRAFT_0560 0.65 +0.2 556,991 - -0.4 557,089 - -3.2 557,145 + -0.0 557,145 + -0.1 557,170 + +0.2 557,171 - -1.8 557,172 + +0.4 557,173 - +0.7 557,173 - +1.1 557,177 - -0.3 557,225 - -0.3 557,243 + +0.2 557,251 - +1.9 557,254 + -0.0 557,254 + -1.2 557,254 + +3.0 557,254 + -0.2 557,254 + +1.1 557,254 + +0.1 557,255 - +1.0 557,255 - -1.0 557,255 - -0.8 557,255 - +0.6 557,289 - +0.1 557,289 - -0.6 557,296 + -1.7 557,375 + +1.5 557,482 + -0.4 557,483 - +0.2 557,516 + +0.2 557,666 + EX28DRAFT_0561 0.42 +0.0 557,777 - EX28DRAFT_0561 0.68 +0.5 557,989 + +1.4 558,147 + -0.2 558,148 - -0.3 558,156 - -2.0 558,163 + +0.4 558,164 - -0.7 558,212 + -0.1 558,310 - EX28DRAFT_0562 0.13 +0.2 558,387 + EX28DRAFT_0562 0.16 +0.9 558,387 + EX28DRAFT_0562 0.16 -2.6 558,387 + EX28DRAFT_0562 0.16 +0.5 558,414 + EX28DRAFT_0562 0.17 -0.5 558,545 - EX28DRAFT_0562 0.22 -0.9 558,546 + EX28DRAFT_0562 0.22 +3.6 558,547 - EX28DRAFT_0562 0.22 -0.2 558,568 - EX28DRAFT_0562 0.22 +1.0 558,693 + EX28DRAFT_0562 0.27 -0.4 558,772 - EX28DRAFT_0562 0.30 -0.5 558,801 + EX28DRAFT_0562 0.31 +0.6 558,801 + EX28DRAFT_0562 0.31 +0.7
Or see this region's nucleotide sequence