Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0519 and EX28DRAFT_0520 are separated by 80 nucleotides EX28DRAFT_0520 and EX28DRAFT_0521 overlap by 4 nucleotides EX28DRAFT_0521 and EX28DRAFT_0522 overlap by 8 nucleotides
EX28DRAFT_0519: EX28DRAFT_0519 - Predicted nucleoside-diphosphate sugar epimerases, at 512,203 to 514,089
_0519
EX28DRAFT_0520: EX28DRAFT_0520 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 514,170 to 514,709
_0520
EX28DRAFT_0521: EX28DRAFT_0521 - Nucleoside-diphosphate-sugar epimerases, at 514,706 to 515,524
_0521
EX28DRAFT_0522: EX28DRAFT_0522 - hypothetical protein, at 515,517 to 516,776
_0522
Position (kb) 514
515 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 513.201 kb on + strand, within EX28DRAFT_0519 at 513.301 kb on - strand, within EX28DRAFT_0519 at 513.301 kb on - strand, within EX28DRAFT_0519 at 513.352 kb on - strand, within EX28DRAFT_0519 at 513.365 kb on + strand, within EX28DRAFT_0519 at 513.366 kb on - strand, within EX28DRAFT_0519 at 513.366 kb on - strand, within EX28DRAFT_0519 at 513.420 kb on + strand, within EX28DRAFT_0519 at 513.510 kb on + strand, within EX28DRAFT_0519 at 514.020 kb on - strand at 514.020 kb on - strand at 514.039 kb on - strand at 514.381 kb on + strand, within EX28DRAFT_0520 at 514.721 kb on - strand at 514.850 kb on + strand, within EX28DRAFT_0521 at 514.893 kb on + strand, within EX28DRAFT_0521 at 515.300 kb on + strand, within EX28DRAFT_0521
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 513,201 + EX28DRAFT_0519 0.53 +0.3 513,301 - EX28DRAFT_0519 0.58 -0.2 513,301 - EX28DRAFT_0519 0.58 +0.5 513,352 - EX28DRAFT_0519 0.61 +0.5 513,365 + EX28DRAFT_0519 0.62 +0.5 513,366 - EX28DRAFT_0519 0.62 +0.2 513,366 - EX28DRAFT_0519 0.62 -3.1 513,420 + EX28DRAFT_0519 0.64 +1.3 513,510 + EX28DRAFT_0519 0.69 +3.1 514,020 - -0.0 514,020 - +1.4 514,039 - +1.2 514,381 + EX28DRAFT_0520 0.39 +0.8 514,721 - -3.0 514,850 + EX28DRAFT_0521 0.18 -0.9 514,893 + EX28DRAFT_0521 0.23 -4.6 515,300 + EX28DRAFT_0521 0.73 -1.2
Or see this region's nucleotide sequence