Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0400

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0399 and EX28DRAFT_0400 are separated by 180 nucleotidesEX28DRAFT_0400 and EX28DRAFT_0401 are separated by 224 nucleotides EX28DRAFT_0399: EX28DRAFT_0399 - Transcriptional regulator, at 374,018 to 374,884 _0399 EX28DRAFT_0400: EX28DRAFT_0400 - Amino acid transporters, at 375,065 to 376,534 _0400 EX28DRAFT_0401: EX28DRAFT_0401 - Outer membrane receptor for ferrienterochelin and colicins, at 376,759 to 378,729 _0401 Position (kb) 375 376 377Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 374.217 kb on - strand, within EX28DRAFT_0399at 374.321 kb on + strand, within EX28DRAFT_0399at 374.321 kb on + strand, within EX28DRAFT_0399at 374.322 kb on - strand, within EX28DRAFT_0399at 374.882 kb on + strandat 374.883 kb on - strandat 374.943 kb on - strandat 374.950 kb on - strandat 374.950 kb on - strandat 374.950 kb on - strandat 374.950 kb on - strandat 374.954 kb on - strandat 374.955 kb on + strandat 374.986 kb on - strandat 375.025 kb on + strandat 375.026 kb on - strandat 375.045 kb on + strandat 375.102 kb on + strandat 375.103 kb on - strandat 375.227 kb on + strand, within EX28DRAFT_0400at 375.228 kb on - strand, within EX28DRAFT_0400at 375.230 kb on - strand, within EX28DRAFT_0400at 375.287 kb on + strand, within EX28DRAFT_0400at 375.317 kb on + strand, within EX28DRAFT_0400at 375.369 kb on - strand, within EX28DRAFT_0400at 375.374 kb on + strand, within EX28DRAFT_0400at 375.500 kb on + strand, within EX28DRAFT_0400at 375.501 kb on - strand, within EX28DRAFT_0400at 375.501 kb on - strand, within EX28DRAFT_0400at 375.501 kb on - strand, within EX28DRAFT_0400at 375.798 kb on + strand, within EX28DRAFT_0400at 375.821 kb on + strand, within EX28DRAFT_0400at 375.821 kb on + strand, within EX28DRAFT_0400at 375.821 kb on + strand, within EX28DRAFT_0400at 375.822 kb on - strand, within EX28DRAFT_0400at 375.822 kb on - strand, within EX28DRAFT_0400at 375.891 kb on + strand, within EX28DRAFT_0400at 376.013 kb on + strand, within EX28DRAFT_0400at 376.014 kb on - strand, within EX28DRAFT_0400at 376.035 kb on - strand, within EX28DRAFT_0400at 376.066 kb on + strand, within EX28DRAFT_0400at 376.066 kb on + strand, within EX28DRAFT_0400at 376.175 kb on + strand, within EX28DRAFT_0400at 376.176 kb on - strand, within EX28DRAFT_0400at 376.214 kb on - strand, within EX28DRAFT_0400at 376.282 kb on + strand, within EX28DRAFT_0400at 376.373 kb on + strand, within EX28DRAFT_0400at 376.373 kb on + strand, within EX28DRAFT_0400at 376.373 kb on + strand, within EX28DRAFT_0400at 376.374 kb on - strand, within EX28DRAFT_0400at 376.374 kb on - strand, within EX28DRAFT_0400at 376.425 kb on - strandat 376.525 kb on + strandat 376.526 kb on - strandat 376.604 kb on - strandat 376.605 kb on + strandat 376.605 kb on + strandat 376.730 kb on + strandat 376.736 kb on + strandat 376.741 kb on - strandat 376.753 kb on + strandat 377.022 kb on - strand, within EX28DRAFT_0401at 377.025 kb on + strand, within EX28DRAFT_0401at 377.026 kb on - strand, within EX28DRAFT_0401at 377.047 kb on + strand, within EX28DRAFT_0401at 377.048 kb on - strand, within EX28DRAFT_0401at 377.220 kb on + strand, within EX28DRAFT_0401at 377.221 kb on - strand, within EX28DRAFT_0401at 377.305 kb on + strand, within EX28DRAFT_0401at 377.305 kb on + strand, within EX28DRAFT_0401at 377.305 kb on + strand, within EX28DRAFT_0401at 377.306 kb on - strand, within EX28DRAFT_0401at 377.306 kb on - strand, within EX28DRAFT_0401at 377.320 kb on + strand, within EX28DRAFT_0401at 377.323 kb on - strand, within EX28DRAFT_0401

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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374,217 - EX28DRAFT_0399 0.23 -0.2
374,321 + EX28DRAFT_0399 0.35 -0.4
374,321 + EX28DRAFT_0399 0.35 -0.0
374,322 - EX28DRAFT_0399 0.35 +0.3
374,882 + -0.0
374,883 - -0.2
374,943 - +0.7
374,950 - +0.3
374,950 - -0.0
374,950 - +0.4
374,950 - +0.3
374,954 - -0.0
374,955 + -0.3
374,986 - +0.5
375,025 + -0.7
375,026 - -0.4
375,045 + -0.0
375,102 + -1.0
375,103 - +0.3
375,227 + EX28DRAFT_0400 0.11 +4.8
375,228 - EX28DRAFT_0400 0.11 +0.9
375,230 - EX28DRAFT_0400 0.11 +0.3
375,287 + EX28DRAFT_0400 0.15 -0.3
375,317 + EX28DRAFT_0400 0.17 +1.7
375,369 - EX28DRAFT_0400 0.21 -0.4
375,374 + EX28DRAFT_0400 0.21 +1.0
375,500 + EX28DRAFT_0400 0.30 -0.1
375,501 - EX28DRAFT_0400 0.30 +0.2
375,501 - EX28DRAFT_0400 0.30 -0.9
375,501 - EX28DRAFT_0400 0.30 -0.9
375,798 + EX28DRAFT_0400 0.50 +0.2
375,821 + EX28DRAFT_0400 0.51 -0.1
375,821 + EX28DRAFT_0400 0.51 +1.7
375,821 + EX28DRAFT_0400 0.51 +0.3
375,822 - EX28DRAFT_0400 0.51 -0.8
375,822 - EX28DRAFT_0400 0.51 -0.9
375,891 + EX28DRAFT_0400 0.56 -0.1
376,013 + EX28DRAFT_0400 0.64 -0.1
376,014 - EX28DRAFT_0400 0.65 +2.2
376,035 - EX28DRAFT_0400 0.66 -0.1
376,066 + EX28DRAFT_0400 0.68 +0.3
376,066 + EX28DRAFT_0400 0.68 -0.4
376,175 + EX28DRAFT_0400 0.76 -0.2
376,176 - EX28DRAFT_0400 0.76 +0.9
376,214 - EX28DRAFT_0400 0.78 +3.9
376,282 + EX28DRAFT_0400 0.83 +0.5
376,373 + EX28DRAFT_0400 0.89 +0.5
376,373 + EX28DRAFT_0400 0.89 -0.8
376,373 + EX28DRAFT_0400 0.89 -0.1
376,374 - EX28DRAFT_0400 0.89 -0.0
376,374 - EX28DRAFT_0400 0.89 +0.3
376,425 - -0.5
376,525 + -0.3
376,526 - -2.1
376,604 - -0.4
376,605 + -0.1
376,605 + +0.5
376,730 + +1.1
376,736 + +0.6
376,741 - -0.8
376,753 + -0.3
377,022 - EX28DRAFT_0401 0.13 +1.9
377,025 + EX28DRAFT_0401 0.13 +0.4
377,026 - EX28DRAFT_0401 0.14 +1.7
377,047 + EX28DRAFT_0401 0.15 +3.3
377,048 - EX28DRAFT_0401 0.15 +1.0
377,220 + EX28DRAFT_0401 0.23 -0.7
377,221 - EX28DRAFT_0401 0.23 -0.2
377,305 + EX28DRAFT_0401 0.28 +1.9
377,305 + EX28DRAFT_0401 0.28 +0.3
377,305 + EX28DRAFT_0401 0.28 -0.7
377,306 - EX28DRAFT_0401 0.28 +1.1
377,306 - EX28DRAFT_0401 0.28 +0.6
377,320 + EX28DRAFT_0401 0.28 -0.0
377,323 - EX28DRAFT_0401 0.29 +1.1

Or see this region's nucleotide sequence