Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0399 and EX28DRAFT_0400 are separated by 180 nucleotides EX28DRAFT_0400 and EX28DRAFT_0401 are separated by 224 nucleotides
EX28DRAFT_0399: EX28DRAFT_0399 - Transcriptional regulator, at 374,018 to 374,884
_0399
EX28DRAFT_0400: EX28DRAFT_0400 - Amino acid transporters, at 375,065 to 376,534
_0400
EX28DRAFT_0401: EX28DRAFT_0401 - Outer membrane receptor for ferrienterochelin and colicins, at 376,759 to 378,729
_0401
Position (kb)
375
376
377 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 374.217 kb on - strand, within EX28DRAFT_0399 at 374.321 kb on + strand, within EX28DRAFT_0399 at 374.321 kb on + strand, within EX28DRAFT_0399 at 374.322 kb on - strand, within EX28DRAFT_0399 at 374.882 kb on + strand at 374.883 kb on - strand at 374.943 kb on - strand at 374.950 kb on - strand at 374.950 kb on - strand at 374.950 kb on - strand at 374.950 kb on - strand at 374.954 kb on - strand at 374.955 kb on + strand at 374.986 kb on - strand at 375.025 kb on + strand at 375.026 kb on - strand at 375.045 kb on + strand at 375.102 kb on + strand at 375.103 kb on - strand at 375.227 kb on + strand, within EX28DRAFT_0400 at 375.228 kb on - strand, within EX28DRAFT_0400 at 375.230 kb on - strand, within EX28DRAFT_0400 at 375.287 kb on + strand, within EX28DRAFT_0400 at 375.317 kb on + strand, within EX28DRAFT_0400 at 375.369 kb on - strand, within EX28DRAFT_0400 at 375.374 kb on + strand, within EX28DRAFT_0400 at 375.500 kb on + strand, within EX28DRAFT_0400 at 375.501 kb on - strand, within EX28DRAFT_0400 at 375.501 kb on - strand, within EX28DRAFT_0400 at 375.501 kb on - strand, within EX28DRAFT_0400 at 375.798 kb on + strand, within EX28DRAFT_0400 at 375.821 kb on + strand, within EX28DRAFT_0400 at 375.821 kb on + strand, within EX28DRAFT_0400 at 375.821 kb on + strand, within EX28DRAFT_0400 at 375.822 kb on - strand, within EX28DRAFT_0400 at 375.822 kb on - strand, within EX28DRAFT_0400 at 375.891 kb on + strand, within EX28DRAFT_0400 at 376.013 kb on + strand, within EX28DRAFT_0400 at 376.014 kb on - strand, within EX28DRAFT_0400 at 376.035 kb on - strand, within EX28DRAFT_0400 at 376.066 kb on + strand, within EX28DRAFT_0400 at 376.066 kb on + strand, within EX28DRAFT_0400 at 376.175 kb on + strand, within EX28DRAFT_0400 at 376.176 kb on - strand, within EX28DRAFT_0400 at 376.214 kb on - strand, within EX28DRAFT_0400 at 376.282 kb on + strand, within EX28DRAFT_0400 at 376.373 kb on + strand, within EX28DRAFT_0400 at 376.373 kb on + strand, within EX28DRAFT_0400 at 376.373 kb on + strand, within EX28DRAFT_0400 at 376.374 kb on - strand, within EX28DRAFT_0400 at 376.374 kb on - strand, within EX28DRAFT_0400 at 376.425 kb on - strand at 376.525 kb on + strand at 376.526 kb on - strand at 376.604 kb on - strand at 376.605 kb on + strand at 376.605 kb on + strand at 376.730 kb on + strand at 376.736 kb on + strand at 376.741 kb on - strand at 376.753 kb on + strand at 377.022 kb on - strand, within EX28DRAFT_0401 at 377.025 kb on + strand, within EX28DRAFT_0401 at 377.026 kb on - strand, within EX28DRAFT_0401 at 377.047 kb on + strand, within EX28DRAFT_0401 at 377.048 kb on - strand, within EX28DRAFT_0401 at 377.220 kb on + strand, within EX28DRAFT_0401 at 377.221 kb on - strand, within EX28DRAFT_0401 at 377.305 kb on + strand, within EX28DRAFT_0401 at 377.305 kb on + strand, within EX28DRAFT_0401 at 377.305 kb on + strand, within EX28DRAFT_0401 at 377.306 kb on - strand, within EX28DRAFT_0401 at 377.306 kb on - strand, within EX28DRAFT_0401 at 377.320 kb on + strand, within EX28DRAFT_0401 at 377.323 kb on - strand, within EX28DRAFT_0401
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 374,217 - EX28DRAFT_0399 0.23 -0.2 374,321 + EX28DRAFT_0399 0.35 -0.4 374,321 + EX28DRAFT_0399 0.35 -0.0 374,322 - EX28DRAFT_0399 0.35 +0.3 374,882 + -0.0 374,883 - -0.2 374,943 - +0.7 374,950 - +0.3 374,950 - -0.0 374,950 - +0.4 374,950 - +0.3 374,954 - -0.0 374,955 + -0.3 374,986 - +0.5 375,025 + -0.7 375,026 - -0.4 375,045 + -0.0 375,102 + -1.0 375,103 - +0.3 375,227 + EX28DRAFT_0400 0.11 +4.8 375,228 - EX28DRAFT_0400 0.11 +0.9 375,230 - EX28DRAFT_0400 0.11 +0.3 375,287 + EX28DRAFT_0400 0.15 -0.3 375,317 + EX28DRAFT_0400 0.17 +1.7 375,369 - EX28DRAFT_0400 0.21 -0.4 375,374 + EX28DRAFT_0400 0.21 +1.0 375,500 + EX28DRAFT_0400 0.30 -0.1 375,501 - EX28DRAFT_0400 0.30 +0.2 375,501 - EX28DRAFT_0400 0.30 -0.9 375,501 - EX28DRAFT_0400 0.30 -0.9 375,798 + EX28DRAFT_0400 0.50 +0.2 375,821 + EX28DRAFT_0400 0.51 -0.1 375,821 + EX28DRAFT_0400 0.51 +1.7 375,821 + EX28DRAFT_0400 0.51 +0.3 375,822 - EX28DRAFT_0400 0.51 -0.8 375,822 - EX28DRAFT_0400 0.51 -0.9 375,891 + EX28DRAFT_0400 0.56 -0.1 376,013 + EX28DRAFT_0400 0.64 -0.1 376,014 - EX28DRAFT_0400 0.65 +2.2 376,035 - EX28DRAFT_0400 0.66 -0.1 376,066 + EX28DRAFT_0400 0.68 +0.3 376,066 + EX28DRAFT_0400 0.68 -0.4 376,175 + EX28DRAFT_0400 0.76 -0.2 376,176 - EX28DRAFT_0400 0.76 +0.9 376,214 - EX28DRAFT_0400 0.78 +3.9 376,282 + EX28DRAFT_0400 0.83 +0.5 376,373 + EX28DRAFT_0400 0.89 +0.5 376,373 + EX28DRAFT_0400 0.89 -0.8 376,373 + EX28DRAFT_0400 0.89 -0.1 376,374 - EX28DRAFT_0400 0.89 -0.0 376,374 - EX28DRAFT_0400 0.89 +0.3 376,425 - -0.5 376,525 + -0.3 376,526 - -2.1 376,604 - -0.4 376,605 + -0.1 376,605 + +0.5 376,730 + +1.1 376,736 + +0.6 376,741 - -0.8 376,753 + -0.3 377,022 - EX28DRAFT_0401 0.13 +1.9 377,025 + EX28DRAFT_0401 0.13 +0.4 377,026 - EX28DRAFT_0401 0.14 +1.7 377,047 + EX28DRAFT_0401 0.15 +3.3 377,048 - EX28DRAFT_0401 0.15 +1.0 377,220 + EX28DRAFT_0401 0.23 -0.7 377,221 - EX28DRAFT_0401 0.23 -0.2 377,305 + EX28DRAFT_0401 0.28 +1.9 377,305 + EX28DRAFT_0401 0.28 +0.3 377,305 + EX28DRAFT_0401 0.28 -0.7 377,306 - EX28DRAFT_0401 0.28 +1.1 377,306 - EX28DRAFT_0401 0.28 +0.6 377,320 + EX28DRAFT_0401 0.28 -0.0 377,323 - EX28DRAFT_0401 0.29 +1.1
Or see this region's nucleotide sequence