Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0368 and EX28DRAFT_0369 are separated by 135 nucleotides EX28DRAFT_0369 and EX28DRAFT_0370 are separated by 209 nucleotides EX28DRAFT_0370 and EX28DRAFT_0371 are separated by 138 nucleotides
EX28DRAFT_0368: EX28DRAFT_0368 - malate:quinone-oxidoreductase, at 339,958 to 341,607
_0368
EX28DRAFT_0369: EX28DRAFT_0369 - Serine protease inhibitor ecotin, at 341,743 to 342,246
_0369
EX28DRAFT_0370: EX28DRAFT_0370 - Protein of unknown function (DUF2534), at 342,456 to 342,716
_0370
EX28DRAFT_0371: EX28DRAFT_0371 - Arabinose efflux permease, at 342,855 to 344,042
_0371
Position (kb) 342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 341.518 kb on + strand at 341.518 kb on + strand at 341.519 kb on - strand at 341.749 kb on + strand at 341.750 kb on - strand at 341.819 kb on + strand, within EX28DRAFT_0369 at 341.820 kb on - strand, within EX28DRAFT_0369 at 341.820 kb on - strand, within EX28DRAFT_0369 at 341.820 kb on - strand, within EX28DRAFT_0369 at 341.846 kb on + strand, within EX28DRAFT_0369 at 341.874 kb on - strand, within EX28DRAFT_0369 at 341.958 kb on - strand, within EX28DRAFT_0369 at 342.063 kb on + strand, within EX28DRAFT_0369 at 342.258 kb on + strand at 342.259 kb on - strand at 342.316 kb on - strand at 342.421 kb on + strand at 342.421 kb on + strand at 342.421 kb on + strand at 342.422 kb on - strand at 342.423 kb on + strand at 342.425 kb on + strand at 342.425 kb on + strand at 342.426 kb on - strand at 342.426 kb on - strand at 342.426 kb on - strand at 342.426 kb on - strand at 342.431 kb on + strand at 342.432 kb on - strand at 342.518 kb on - strand, within EX28DRAFT_0370 at 342.521 kb on + strand, within EX28DRAFT_0370 at 342.521 kb on + strand, within EX28DRAFT_0370 at 342.576 kb on + strand, within EX28DRAFT_0370 at 342.576 kb on + strand, within EX28DRAFT_0370 at 342.577 kb on - strand, within EX28DRAFT_0370 at 342.577 kb on - strand, within EX28DRAFT_0370 at 342.581 kb on + strand, within EX28DRAFT_0370 at 342.581 kb on + strand, within EX28DRAFT_0370 at 342.581 kb on + strand, within EX28DRAFT_0370 at 342.612 kb on + strand, within EX28DRAFT_0370 at 342.612 kb on + strand, within EX28DRAFT_0370 at 342.612 kb on + strand, within EX28DRAFT_0370 at 342.612 kb on + strand, within EX28DRAFT_0370 at 342.613 kb on - strand, within EX28DRAFT_0370 at 342.613 kb on - strand, within EX28DRAFT_0370 at 342.613 kb on - strand, within EX28DRAFT_0370 at 342.613 kb on - strand, within EX28DRAFT_0370 at 342.613 kb on - strand, within EX28DRAFT_0370 at 342.643 kb on - strand, within EX28DRAFT_0370 at 342.715 kb on - strand at 342.731 kb on + strand at 342.735 kb on + strand at 342.736 kb on - strand at 342.736 kb on - strand at 342.809 kb on + strand at 342.920 kb on + strand at 342.921 kb on - strand at 342.933 kb on - strand at 342.947 kb on + strand at 342.947 kb on + strand at 342.971 kb on + strand at 343.047 kb on - strand, within EX28DRAFT_0371 at 343.050 kb on - strand, within EX28DRAFT_0371 at 343.092 kb on - strand, within EX28DRAFT_0371 at 343.113 kb on + strand, within EX28DRAFT_0371 at 343.325 kb on - strand, within EX28DRAFT_0371 at 343.334 kb on - strand, within EX28DRAFT_0371 at 343.339 kb on + strand, within EX28DRAFT_0371 at 343.419 kb on + strand, within EX28DRAFT_0371 at 343.419 kb on + strand, within EX28DRAFT_0371 at 343.463 kb on + strand, within EX28DRAFT_0371 at 343.464 kb on - strand, within EX28DRAFT_0371 at 343.464 kb on - strand, within EX28DRAFT_0371 at 343.467 kb on - strand, within EX28DRAFT_0371 at 343.467 kb on - strand, within EX28DRAFT_0371 at 343.611 kb on - strand, within EX28DRAFT_0371 at 343.644 kb on + strand, within EX28DRAFT_0371 at 343.645 kb on - strand, within EX28DRAFT_0371 at 343.645 kb on - strand, within EX28DRAFT_0371
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 341,518 + -1.4 341,518 + +1.2 341,519 - +1.3 341,749 + +1.3 341,750 - -3.1 341,819 + EX28DRAFT_0369 0.15 +0.0 341,820 - EX28DRAFT_0369 0.15 -2.7 341,820 - EX28DRAFT_0369 0.15 +1.2 341,820 - EX28DRAFT_0369 0.15 +0.2 341,846 + EX28DRAFT_0369 0.20 -2.6 341,874 - EX28DRAFT_0369 0.26 -0.4 341,958 - EX28DRAFT_0369 0.43 +0.6 342,063 + EX28DRAFT_0369 0.63 +0.1 342,258 + -0.5 342,259 - +0.4 342,316 - +0.5 342,421 + +0.6 342,421 + -0.4 342,421 + +0.3 342,422 - +0.7 342,423 + -0.6 342,425 + -0.9 342,425 + -0.5 342,426 - -1.3 342,426 - -0.7 342,426 - +0.7 342,426 - +2.0 342,431 + -0.7 342,432 - +0.1 342,518 - EX28DRAFT_0370 0.24 -0.4 342,521 + EX28DRAFT_0370 0.25 +0.6 342,521 + EX28DRAFT_0370 0.25 -0.0 342,576 + EX28DRAFT_0370 0.46 +1.3 342,576 + EX28DRAFT_0370 0.46 -0.7 342,577 - EX28DRAFT_0370 0.46 +0.2 342,577 - EX28DRAFT_0370 0.46 +0.7 342,581 + EX28DRAFT_0370 0.48 -0.7 342,581 + EX28DRAFT_0370 0.48 -1.0 342,581 + EX28DRAFT_0370 0.48 +2.2 342,612 + EX28DRAFT_0370 0.60 +0.6 342,612 + EX28DRAFT_0370 0.60 -0.3 342,612 + EX28DRAFT_0370 0.60 +2.5 342,612 + EX28DRAFT_0370 0.60 -0.4 342,613 - EX28DRAFT_0370 0.60 -0.8 342,613 - EX28DRAFT_0370 0.60 -1.4 342,613 - EX28DRAFT_0370 0.60 +0.0 342,613 - EX28DRAFT_0370 0.60 +0.3 342,613 - EX28DRAFT_0370 0.60 -1.7 342,643 - EX28DRAFT_0370 0.72 -0.3 342,715 - +0.5 342,731 + -0.4 342,735 + +0.6 342,736 - -0.9 342,736 - -1.1 342,809 + +0.0 342,920 + +1.4 342,921 - +0.1 342,933 - +2.9 342,947 + -0.4 342,947 + -2.8 342,971 + -0.7 343,047 - EX28DRAFT_0371 0.16 -2.0 343,050 - EX28DRAFT_0371 0.16 -0.7 343,092 - EX28DRAFT_0371 0.20 +0.1 343,113 + EX28DRAFT_0371 0.22 +1.0 343,325 - EX28DRAFT_0371 0.40 -0.5 343,334 - EX28DRAFT_0371 0.40 -1.5 343,339 + EX28DRAFT_0371 0.41 -1.3 343,419 + EX28DRAFT_0371 0.47 +0.9 343,419 + EX28DRAFT_0371 0.47 -0.4 343,463 + EX28DRAFT_0371 0.51 -0.1 343,464 - EX28DRAFT_0371 0.51 +0.9 343,464 - EX28DRAFT_0371 0.51 -2.9 343,467 - EX28DRAFT_0371 0.52 +0.3 343,467 - EX28DRAFT_0371 0.52 +0.9 343,611 - EX28DRAFT_0371 0.64 -0.3 343,644 + EX28DRAFT_0371 0.66 +0.2 343,645 - EX28DRAFT_0371 0.66 +1.3 343,645 - EX28DRAFT_0371 0.66 +0.1
Or see this region's nucleotide sequence