Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0318

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0317 and EX28DRAFT_0318 are separated by 81 nucleotidesEX28DRAFT_0318 and EX28DRAFT_0319 are separated by 94 nucleotides EX28DRAFT_0317: EX28DRAFT_0317 - Di- and tricarboxylate transporters, at 276,288 to 278,120 _0317 EX28DRAFT_0318: EX28DRAFT_0318 - Predicted hydrolases of HD superfamily, at 278,202 to 278,801 _0318 EX28DRAFT_0319: EX28DRAFT_0319 - Aspartate/tyrosine/aromatic aminotransferase, at 278,896 to 280,110 _0319 Position (kb) 278 279Strain fitness (log2 ratio) -2 -1 0 1at 277.619 kb on + strand, within EX28DRAFT_0317at 277.671 kb on + strand, within EX28DRAFT_0317at 277.673 kb on + strand, within EX28DRAFT_0317at 277.674 kb on - strand, within EX28DRAFT_0317at 277.803 kb on + strand, within EX28DRAFT_0317at 277.827 kb on - strand, within EX28DRAFT_0317at 277.853 kb on + strand, within EX28DRAFT_0317at 278.203 kb on + strandat 278.239 kb on - strandat 278.268 kb on - strand, within EX28DRAFT_0318at 278.273 kb on - strand, within EX28DRAFT_0318at 278.522 kb on + strand, within EX28DRAFT_0318at 278.522 kb on + strand, within EX28DRAFT_0318at 278.523 kb on - strand, within EX28DRAFT_0318at 278.523 kb on - strand, within EX28DRAFT_0318at 278.524 kb on + strand, within EX28DRAFT_0318at 278.603 kb on - strand, within EX28DRAFT_0318at 278.802 kb on - strandat 278.802 kb on - strandat 278.806 kb on + strandat 278.891 kb on + strandat 278.891 kb on + strandat 279.078 kb on + strand, within EX28DRAFT_0319at 279.111 kb on + strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.112 kb on - strand, within EX28DRAFT_0319at 279.113 kb on + strand, within EX28DRAFT_0319at 279.113 kb on + strand, within EX28DRAFT_0319at 279.114 kb on - strand, within EX28DRAFT_0319at 279.191 kb on + strand, within EX28DRAFT_0319at 279.192 kb on - strand, within EX28DRAFT_0319at 279.283 kb on + strand, within EX28DRAFT_0319at 279.319 kb on - strand, within EX28DRAFT_0319at 279.320 kb on + strand, within EX28DRAFT_0319at 279.352 kb on + strand, within EX28DRAFT_0319at 279.505 kb on + strand, within EX28DRAFT_0319at 279.506 kb on - strand, within EX28DRAFT_0319at 279.506 kb on - strand, within EX28DRAFT_0319at 279.506 kb on - strand, within EX28DRAFT_0319at 279.506 kb on - strand, within EX28DRAFT_0319at 279.506 kb on - strand, within EX28DRAFT_0319

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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277,619 + EX28DRAFT_0317 0.73 -0.5
277,671 + EX28DRAFT_0317 0.75 +1.0
277,673 + EX28DRAFT_0317 0.76 -0.9
277,674 - EX28DRAFT_0317 0.76 -0.1
277,803 + EX28DRAFT_0317 0.83 +0.6
277,827 - EX28DRAFT_0317 0.84 +0.1
277,853 + EX28DRAFT_0317 0.85 +0.1
278,203 + +0.5
278,239 - -1.5
278,268 - EX28DRAFT_0318 0.11 +0.1
278,273 - EX28DRAFT_0318 0.12 -1.0
278,522 + EX28DRAFT_0318 0.53 +0.0
278,522 + EX28DRAFT_0318 0.53 -1.1
278,523 - EX28DRAFT_0318 0.54 -1.0
278,523 - EX28DRAFT_0318 0.54 +0.4
278,524 + EX28DRAFT_0318 0.54 +0.0
278,603 - EX28DRAFT_0318 0.67 -0.1
278,802 - -0.1
278,802 - +1.3
278,806 + +0.2
278,891 + -0.6
278,891 + +0.2
279,078 + EX28DRAFT_0319 0.15 -0.4
279,111 + EX28DRAFT_0319 0.18 -0.7
279,112 - EX28DRAFT_0319 0.18 +0.4
279,112 - EX28DRAFT_0319 0.18 +1.2
279,112 - EX28DRAFT_0319 0.18 -0.7
279,112 - EX28DRAFT_0319 0.18 -0.2
279,112 - EX28DRAFT_0319 0.18 +0.2
279,112 - EX28DRAFT_0319 0.18 +0.1
279,112 - EX28DRAFT_0319 0.18 -2.1
279,112 - EX28DRAFT_0319 0.18 -0.7
279,113 + EX28DRAFT_0319 0.18 +1.3
279,113 + EX28DRAFT_0319 0.18 +0.1
279,114 - EX28DRAFT_0319 0.18 -0.7
279,191 + EX28DRAFT_0319 0.24 -0.7
279,192 - EX28DRAFT_0319 0.24 -0.2
279,283 + EX28DRAFT_0319 0.32 -1.2
279,319 - EX28DRAFT_0319 0.35 -0.3
279,320 + EX28DRAFT_0319 0.35 -1.4
279,352 + EX28DRAFT_0319 0.38 +0.6
279,505 + EX28DRAFT_0319 0.50 -0.1
279,506 - EX28DRAFT_0319 0.50 -0.4
279,506 - EX28DRAFT_0319 0.50 -0.8
279,506 - EX28DRAFT_0319 0.50 -1.1
279,506 - EX28DRAFT_0319 0.50 -0.1
279,506 - EX28DRAFT_0319 0.50 +0.6

Or see this region's nucleotide sequence