Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0288 and EX28DRAFT_0289 are separated by 70 nucleotides EX28DRAFT_0289 and EX28DRAFT_0290 overlap by 11 nucleotides EX28DRAFT_0290 and EX28DRAFT_0291 are separated by 229 nucleotides
EX28DRAFT_0288: EX28DRAFT_0288 - acetyl-CoA carboxylase, carboxyl transferase, beta subunit, at 250,635 to 251,540
_0288
EX28DRAFT_0289: EX28DRAFT_0289 - folylpolyglutamate synthase/dihydrofolate synthase, at 251,611 to 252,879
_0289
EX28DRAFT_0290: EX28DRAFT_0290 - Uncharacterized protein conserved in bacteria, at 252,869 to 253,561
_0290
EX28DRAFT_0291: EX28DRAFT_0291 - Uncharacterized membrane protein, required for colicin V production, at 253,791 to 254,279
_0291
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1 at 252.931 kb on + strand at 252.931 kb on + strand at 252.988 kb on + strand, within EX28DRAFT_0290 at 253.328 kb on + strand, within EX28DRAFT_0290 at 253.329 kb on - strand, within EX28DRAFT_0290 at 253.363 kb on + strand, within EX28DRAFT_0290 at 253.413 kb on - strand, within EX28DRAFT_0290 at 253.490 kb on - strand, within EX28DRAFT_0290 at 253.570 kb on + strand at 253.697 kb on + strand at 253.742 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 252,931 + -1.0 252,931 + +1.0 252,988 + EX28DRAFT_0290 0.17 -2.0 253,328 + EX28DRAFT_0290 0.66 +1.3 253,329 - EX28DRAFT_0290 0.66 +0.3 253,363 + EX28DRAFT_0290 0.71 +1.1 253,413 - EX28DRAFT_0290 0.78 +0.8 253,490 - EX28DRAFT_0290 0.90 -0.9 253,570 + +0.5 253,697 + -0.5 253,742 + -1.0
Or see this region's nucleotide sequence