Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0274 and EX28DRAFT_0275 are separated by 60 nucleotides EX28DRAFT_0275 and EX28DRAFT_0276 are separated by 2 nucleotides EX28DRAFT_0276 and EX28DRAFT_0277 overlap by 1 nucleotides
EX28DRAFT_0274: EX28DRAFT_0274 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 236,191 to 237,123
_0274
EX28DRAFT_0275: EX28DRAFT_0275 - chorismate synthase (EC 4.2.3.5), at 237,184 to 238,269
_0275
EX28DRAFT_0276: EX28DRAFT_0276 - Murein endopeptidase, at 238,272 to 239,096
_0276
EX28DRAFT_0277: EX28DRAFT_0277 - Predicted permeases, at 239,096 to 239,905
_0277
Position (kb) 237
238
239 Strain fitness (log2 ratio) -2
-1
0
1 at 236.197 kb on - strand at 236.201 kb on + strand at 236.233 kb on - strand at 236.237 kb on + strand at 236.238 kb on - strand at 236.284 kb on - strand at 236.504 kb on - strand, within EX28DRAFT_0274 at 236.504 kb on - strand, within EX28DRAFT_0274 at 236.644 kb on + strand, within EX28DRAFT_0274 at 236.791 kb on + strand, within EX28DRAFT_0274 at 236.942 kb on - strand, within EX28DRAFT_0274 at 236.990 kb on + strand, within EX28DRAFT_0274 at 236.990 kb on + strand, within EX28DRAFT_0274 at 236.990 kb on + strand, within EX28DRAFT_0274 at 236.991 kb on - strand, within EX28DRAFT_0274 at 236.991 kb on - strand, within EX28DRAFT_0274 at 237.063 kb on + strand at 237.113 kb on - strand at 237.113 kb on - strand at 237.121 kb on + strand at 237.848 kb on + strand, within EX28DRAFT_0275 at 238.403 kb on + strand, within EX28DRAFT_0276 at 238.440 kb on - strand, within EX28DRAFT_0276 at 238.444 kb on - strand, within EX28DRAFT_0276 at 238.474 kb on - strand, within EX28DRAFT_0276 at 238.529 kb on + strand, within EX28DRAFT_0276 at 238.529 kb on + strand, within EX28DRAFT_0276 at 238.781 kb on + strand, within EX28DRAFT_0276 at 239.089 kb on + strand at 239.095 kb on - strand at 239.120 kb on - strand at 239.176 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 236,197 - -1.0 236,201 + -0.6 236,233 - +0.4 236,237 + +0.1 236,238 - -1.5 236,284 - +0.1 236,504 - EX28DRAFT_0274 0.34 +1.2 236,504 - EX28DRAFT_0274 0.34 +0.5 236,644 + EX28DRAFT_0274 0.49 -0.8 236,791 + EX28DRAFT_0274 0.64 -1.7 236,942 - EX28DRAFT_0274 0.80 -0.1 236,990 + EX28DRAFT_0274 0.86 +0.4 236,990 + EX28DRAFT_0274 0.86 +0.1 236,990 + EX28DRAFT_0274 0.86 -0.3 236,991 - EX28DRAFT_0274 0.86 -2.2 236,991 - EX28DRAFT_0274 0.86 -1.2 237,063 + +0.9 237,113 - -1.7 237,113 - -0.5 237,121 + +0.9 237,848 + EX28DRAFT_0275 0.61 -1.0 238,403 + EX28DRAFT_0276 0.16 +0.9 238,440 - EX28DRAFT_0276 0.20 +1.5 238,444 - EX28DRAFT_0276 0.21 -0.7 238,474 - EX28DRAFT_0276 0.24 -0.4 238,529 + EX28DRAFT_0276 0.31 +0.3 238,529 + EX28DRAFT_0276 0.31 +0.7 238,781 + EX28DRAFT_0276 0.62 -1.2 239,089 + +0.8 239,095 - -1.8 239,120 - -0.1 239,176 + -0.1
Or see this region's nucleotide sequence