Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0221 and EX28DRAFT_0222 are separated by 186 nucleotides EX28DRAFT_0222 and EX28DRAFT_0223 are separated by 3 nucleotides EX28DRAFT_0223 and EX28DRAFT_0224 are separated by 48 nucleotides EX28DRAFT_0224 and EX28DRAFT_0225 are separated by 258 nucleotides EX28DRAFT_0225 and EX28DRAFT_0226 are separated by 42 nucleotides EX28DRAFT_0226 and EX28DRAFT_0227 are separated by 22 nucleotides
EX28DRAFT_0221: EX28DRAFT_0221 - FlxA-like protein, at 175,579 to 175,917
_0221
EX28DRAFT_0222: EX28DRAFT_0222 - tRNA, at 176,104 to 176,179
_0222
EX28DRAFT_0223: EX28DRAFT_0223 - tRNA, at 176,183 to 176,258
_0223
EX28DRAFT_0224: EX28DRAFT_0224 - tRNA, at 176,307 to 176,379
_0224
EX28DRAFT_0225: EX28DRAFT_0225 - glutamyl-tRNA synthetase, bacterial family, at 176,638 to 178,053
_0225
EX28DRAFT_0226: EX28DRAFT_0226 - Putative transcription regulator (DUF1323), at 178,096 to 178,467
_0226
EX28DRAFT_0227: EX28DRAFT_0227 - Putative transcription regulator (DUF1323), at 178,490 to 178,852
_0227
Position (kb) 176
177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 175.918 kb on - strand at 175.936 kb on - strand at 175.965 kb on - strand at 175.984 kb on + strand at 176.008 kb on - strand at 176.019 kb on - strand at 176.055 kb on - strand at 176.271 kb on + strand at 176.272 kb on - strand at 176.272 kb on - strand at 176.275 kb on + strand at 176.276 kb on - strand at 176.276 kb on - strand at 176.360 kb on - strand, within EX28DRAFT_0224 at 176.444 kb on - strand at 176.444 kb on - strand at 176.457 kb on - strand at 176.619 kb on + strand at 178.051 kb on + strand at 178.052 kb on - strand at 178.056 kb on - strand at 178.097 kb on + strand at 178.142 kb on - strand, within EX28DRAFT_0226 at 178.160 kb on - strand, within EX28DRAFT_0226 at 178.247 kb on + strand, within EX28DRAFT_0226 at 178.247 kb on + strand, within EX28DRAFT_0226 at 178.312 kb on - strand, within EX28DRAFT_0226 at 178.314 kb on + strand, within EX28DRAFT_0226 at 178.314 kb on + strand, within EX28DRAFT_0226 at 178.314 kb on + strand, within EX28DRAFT_0226 at 178.315 kb on - strand, within EX28DRAFT_0226 at 178.338 kb on + strand, within EX28DRAFT_0226 at 178.471 kb on - strand at 178.489 kb on - strand at 178.624 kb on + strand, within EX28DRAFT_0227 at 178.624 kb on + strand, within EX28DRAFT_0227 at 178.624 kb on + strand, within EX28DRAFT_0227 at 178.624 kb on + strand, within EX28DRAFT_0227 at 178.625 kb on - strand, within EX28DRAFT_0227 at 178.712 kb on + strand, within EX28DRAFT_0227 at 178.783 kb on + strand, within EX28DRAFT_0227 at 178.783 kb on + strand, within EX28DRAFT_0227 at 178.784 kb on - strand, within EX28DRAFT_0227 at 178.804 kb on - strand, within EX28DRAFT_0227 at 178.896 kb on - strand at 178.896 kb on - strand at 178.898 kb on - strand at 179.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 175,918 - -0.1 175,936 - +2.7 175,965 - -0.9 175,984 + -0.5 176,008 - -2.8 176,019 - +1.1 176,055 - -1.3 176,271 + -0.5 176,272 - +0.5 176,272 - -0.6 176,275 + -1.6 176,276 - -0.4 176,276 - -0.7 176,360 - EX28DRAFT_0224 0.73 -1.9 176,444 - -2.2 176,444 - -2.1 176,457 - -2.5 176,619 + -2.3 178,051 + -0.2 178,052 - +0.2 178,056 - +2.0 178,097 + +0.3 178,142 - EX28DRAFT_0226 0.12 -0.4 178,160 - EX28DRAFT_0226 0.17 +0.9 178,247 + EX28DRAFT_0226 0.41 +0.4 178,247 + EX28DRAFT_0226 0.41 +0.5 178,312 - EX28DRAFT_0226 0.58 -0.3 178,314 + EX28DRAFT_0226 0.59 +0.3 178,314 + EX28DRAFT_0226 0.59 +0.2 178,314 + EX28DRAFT_0226 0.59 +0.5 178,315 - EX28DRAFT_0226 0.59 -0.6 178,338 + EX28DRAFT_0226 0.65 +1.8 178,471 - -0.3 178,489 - -1.8 178,624 + EX28DRAFT_0227 0.37 -1.0 178,624 + EX28DRAFT_0227 0.37 +1.0 178,624 + EX28DRAFT_0227 0.37 +1.0 178,624 + EX28DRAFT_0227 0.37 +0.9 178,625 - EX28DRAFT_0227 0.37 -3.2 178,712 + EX28DRAFT_0227 0.61 +0.6 178,783 + EX28DRAFT_0227 0.81 +0.9 178,783 + EX28DRAFT_0227 0.81 +1.0 178,784 - EX28DRAFT_0227 0.81 -0.8 178,804 - EX28DRAFT_0227 0.87 -0.1 178,896 - -0.7 178,896 - -0.3 178,898 - -0.0 179,035 + -2.1
Or see this region's nucleotide sequence