Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0210 and EX28DRAFT_0211 are separated by 44 nucleotides EX28DRAFT_0211 and EX28DRAFT_0212 are separated by 40 nucleotides EX28DRAFT_0212 and EX28DRAFT_0213 are separated by 44 nucleotides EX28DRAFT_0213 and EX28DRAFT_0214 are separated by 317 nucleotides
EX28DRAFT_0210: EX28DRAFT_0210 - pyridoxal kinase, at 164,387 to 165,223
_0210
EX28DRAFT_0211: EX28DRAFT_0211 - PTS system, glucose subfamily, IIA component, at 165,268 to 165,777
_0211
EX28DRAFT_0212: EX28DRAFT_0212 - phosphoenolpyruvate-protein phosphotransferase, at 165,818 to 167,545
_0212
EX28DRAFT_0213: EX28DRAFT_0213 - Phosphotransferase System HPr (HPr) Family, at 167,590 to 167,847
_0213
EX28DRAFT_0214: EX28DRAFT_0214 - cysteine synthase A, at 168,165 to 169,136
_0214
Position (kb) 165
166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 164.852 kb on - strand, within EX28DRAFT_0210 at 164.864 kb on + strand, within EX28DRAFT_0210 at 164.880 kb on + strand, within EX28DRAFT_0210 at 164.899 kb on + strand, within EX28DRAFT_0210 at 165.180 kb on - strand at 165.180 kb on - strand at 165.197 kb on + strand at 165.208 kb on + strand at 165.209 kb on - strand at 167.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 164,852 - EX28DRAFT_0210 0.56 -3.3 164,864 + EX28DRAFT_0210 0.57 +1.5 164,880 + EX28DRAFT_0210 0.59 -1.0 164,899 + EX28DRAFT_0210 0.61 +1.0 165,180 - +1.3 165,180 - -0.4 165,197 + -0.7 165,208 + -0.6 165,209 - -1.0 167,864 - -0.5
Or see this region's nucleotide sequence