Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0180 and EX28DRAFT_0181 overlap by 1 nucleotides EX28DRAFT_0181 and EX28DRAFT_0182 are separated by 145 nucleotides EX28DRAFT_0182 and EX28DRAFT_0183 are separated by 16 nucleotides
EX28DRAFT_0180: EX28DRAFT_0180 - Peroxiredoxin, at 130,381 to 130,851
_0180
EX28DRAFT_0181: EX28DRAFT_0181 - Glycine cleavage system regulatory protein, at 130,851 to 131,420
_0181
EX28DRAFT_0182: EX28DRAFT_0182 - 4-hydroxy-tetrahydrodipicolinate synthase, at 131,566 to 132,444
_0182
EX28DRAFT_0183: EX28DRAFT_0183 - Uncharacterized lipoprotein, at 132,461 to 133,495
_0183
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 130.853 kb on - strand at 130.896 kb on + strand at 130.899 kb on - strand at 130.986 kb on - strand, within EX28DRAFT_0181 at 131.055 kb on - strand, within EX28DRAFT_0181 at 131.128 kb on - strand, within EX28DRAFT_0181 at 131.268 kb on - strand, within EX28DRAFT_0181 at 131.268 kb on - strand, within EX28DRAFT_0181 at 131.270 kb on + strand, within EX28DRAFT_0181 at 131.271 kb on - strand, within EX28DRAFT_0181 at 131.316 kb on - strand, within EX28DRAFT_0181 at 131.444 kb on - strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.480 kb on - strand at 131.480 kb on - strand at 131.480 kb on - strand at 131.480 kb on - strand at 131.480 kb on - strand at 132.517 kb on + strand at 132.653 kb on + strand, within EX28DRAFT_0183 at 132.653 kb on + strand, within EX28DRAFT_0183 at 132.655 kb on + strand, within EX28DRAFT_0183 at 132.658 kb on + strand, within EX28DRAFT_0183 at 132.658 kb on + strand, within EX28DRAFT_0183 at 132.845 kb on + strand, within EX28DRAFT_0183 at 132.846 kb on - strand, within EX28DRAFT_0183 at 132.988 kb on + strand, within EX28DRAFT_0183 at 132.988 kb on + strand, within EX28DRAFT_0183 at 133.149 kb on + strand, within EX28DRAFT_0183 at 133.298 kb on + strand, within EX28DRAFT_0183 at 133.298 kb on + strand, within EX28DRAFT_0183 at 133.367 kb on + strand, within EX28DRAFT_0183 at 133.367 kb on + strand, within EX28DRAFT_0183 at 133.367 kb on + strand, within EX28DRAFT_0183 at 133.367 kb on + strand, within EX28DRAFT_0183 at 133.368 kb on - strand, within EX28DRAFT_0183
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 130,853 - -2.0 130,896 + -0.9 130,899 - -1.2 130,986 - EX28DRAFT_0181 0.24 -2.9 131,055 - EX28DRAFT_0181 0.36 +1.4 131,128 - EX28DRAFT_0181 0.49 +0.3 131,268 - EX28DRAFT_0181 0.73 +0.9 131,268 - EX28DRAFT_0181 0.73 +2.2 131,270 + EX28DRAFT_0181 0.74 -1.6 131,271 - EX28DRAFT_0181 0.74 +0.5 131,316 - EX28DRAFT_0181 0.82 -1.9 131,444 - +0.9 131,479 + +1.0 131,479 + -0.2 131,479 + +0.3 131,479 + +0.1 131,479 + -1.4 131,479 + -1.0 131,479 + +0.3 131,479 + -1.5 131,479 + -1.2 131,480 - +1.6 131,480 - -0.6 131,480 - -0.2 131,480 - +1.1 131,480 - -1.3 132,517 + +0.5 132,653 + EX28DRAFT_0183 0.19 +0.6 132,653 + EX28DRAFT_0183 0.19 +0.0 132,655 + EX28DRAFT_0183 0.19 -0.4 132,658 + EX28DRAFT_0183 0.19 +2.6 132,658 + EX28DRAFT_0183 0.19 -0.2 132,845 + EX28DRAFT_0183 0.37 +0.2 132,846 - EX28DRAFT_0183 0.37 -0.1 132,988 + EX28DRAFT_0183 0.51 +0.2 132,988 + EX28DRAFT_0183 0.51 +1.1 133,149 + EX28DRAFT_0183 0.66 +2.1 133,298 + EX28DRAFT_0183 0.81 -2.1 133,298 + EX28DRAFT_0183 0.81 +0.3 133,367 + EX28DRAFT_0183 0.88 -0.6 133,367 + EX28DRAFT_0183 0.88 +2.6 133,367 + EX28DRAFT_0183 0.88 -0.3 133,367 + EX28DRAFT_0183 0.88 -1.1 133,368 - EX28DRAFT_0183 0.88 +0.4
Or see this region's nucleotide sequence