Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0166 and EX28DRAFT_0167 are separated by 207 nucleotides EX28DRAFT_0167 and EX28DRAFT_0168 overlap by 4 nucleotides EX28DRAFT_0168 and EX28DRAFT_0169 are separated by 266 nucleotides
EX28DRAFT_0166: EX28DRAFT_0166 - polyphosphate kinase 1, at 113,789 to 115,849
_0166
EX28DRAFT_0167: EX28DRAFT_0167 - phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent, at 116,057 to 116,698
_0167
EX28DRAFT_0168: EX28DRAFT_0168 - phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 116,695 to 117,732
_0168
EX28DRAFT_0169: EX28DRAFT_0169 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 117,999 to 119,429
_0169
Position (kb) 116
117
118 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 115.701 kb on + strand at 115.702 kb on - strand at 115.726 kb on - strand at 115.787 kb on + strand at 115.788 kb on - strand at 115.798 kb on + strand at 115.814 kb on + strand at 115.814 kb on + strand at 115.828 kb on + strand at 115.830 kb on + strand at 115.831 kb on - strand at 115.885 kb on + strand at 115.886 kb on - strand at 115.886 kb on - strand at 115.903 kb on - strand at 115.925 kb on + strand at 115.925 kb on + strand at 115.926 kb on - strand at 115.926 kb on - strand at 116.015 kb on + strand at 116.015 kb on + strand at 116.015 kb on + strand at 116.015 kb on + strand at 116.015 kb on + strand at 116.016 kb on - strand at 116.051 kb on - strand at 116.051 kb on - strand at 116.058 kb on + strand at 116.433 kb on + strand, within EX28DRAFT_0167 at 117.757 kb on + strand at 117.758 kb on - strand at 117.758 kb on - strand at 117.762 kb on - strand at 117.762 kb on - strand at 117.762 kb on - strand at 117.762 kb on - strand at 117.919 kb on - strand at 117.919 kb on - strand at 117.919 kb on - strand at 118.010 kb on + strand at 118.260 kb on - strand, within EX28DRAFT_0169 at 118.357 kb on - strand, within EX28DRAFT_0169 at 118.357 kb on - strand, within EX28DRAFT_0169 at 118.439 kb on + strand, within EX28DRAFT_0169 at 118.439 kb on + strand, within EX28DRAFT_0169 at 118.497 kb on - strand, within EX28DRAFT_0169 at 118.507 kb on - strand, within EX28DRAFT_0169 at 118.529 kb on - strand, within EX28DRAFT_0169 at 118.532 kb on + strand, within EX28DRAFT_0169 at 118.532 kb on + strand, within EX28DRAFT_0169 at 118.532 kb on + strand, within EX28DRAFT_0169 at 118.533 kb on - strand, within EX28DRAFT_0169 at 118.533 kb on - strand, within EX28DRAFT_0169 at 118.587 kb on + strand, within EX28DRAFT_0169 at 118.724 kb on + strand, within EX28DRAFT_0169 at 118.724 kb on + strand, within EX28DRAFT_0169 at 118.725 kb on - strand, within EX28DRAFT_0169
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 115,701 + -0.5 115,702 - -1.8 115,726 - -2.5 115,787 + -1.4 115,788 - -0.4 115,798 + -0.3 115,814 + +0.5 115,814 + -0.7 115,828 + -1.0 115,830 + -2.1 115,831 - -0.8 115,885 + +0.7 115,886 - -0.2 115,886 - +0.2 115,903 - +0.3 115,925 + -0.4 115,925 + -0.8 115,926 - -2.5 115,926 - -1.9 116,015 + +1.5 116,015 + +0.4 116,015 + +1.2 116,015 + -0.1 116,015 + -0.8 116,016 - +2.4 116,051 - +3.4 116,051 - -3.0 116,058 + -0.8 116,433 + EX28DRAFT_0167 0.59 -0.7 117,757 + +0.1 117,758 - -0.8 117,758 - -0.2 117,762 - -1.4 117,762 - +0.8 117,762 - +0.4 117,762 - -0.0 117,919 - -1.2 117,919 - +0.4 117,919 - -1.7 118,010 + -0.6 118,260 - EX28DRAFT_0169 0.18 +1.0 118,357 - EX28DRAFT_0169 0.25 +1.6 118,357 - EX28DRAFT_0169 0.25 -2.8 118,439 + EX28DRAFT_0169 0.31 +0.3 118,439 + EX28DRAFT_0169 0.31 -2.2 118,497 - EX28DRAFT_0169 0.35 -0.0 118,507 - EX28DRAFT_0169 0.35 -0.1 118,529 - EX28DRAFT_0169 0.37 -1.5 118,532 + EX28DRAFT_0169 0.37 -1.9 118,532 + EX28DRAFT_0169 0.37 -1.1 118,532 + EX28DRAFT_0169 0.37 +0.2 118,533 - EX28DRAFT_0169 0.37 +0.2 118,533 - EX28DRAFT_0169 0.37 -0.1 118,587 + EX28DRAFT_0169 0.41 +1.5 118,724 + EX28DRAFT_0169 0.51 +0.9 118,724 + EX28DRAFT_0169 0.51 +0.6 118,725 - EX28DRAFT_0169 0.51 +0.1
Or see this region's nucleotide sequence