Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0154

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0153 and EX28DRAFT_0154 are separated by 12 nucleotidesEX28DRAFT_0154 and EX28DRAFT_0155 are separated by 11 nucleotidesEX28DRAFT_0155 and EX28DRAFT_0156 are separated by 9 nucleotides EX28DRAFT_0153: EX28DRAFT_0153 - Predicted dehydrogenases and related proteins, at 99,438 to 100,571 _0153 EX28DRAFT_0154: EX28DRAFT_0154 - Uncharacterized protein conserved in bacteria, at 100,584 to 102,488 _0154 EX28DRAFT_0155: EX28DRAFT_0155 - Sugar phosphate isomerases/epimerases, at 102,500 to 103,390 _0155 EX28DRAFT_0156: EX28DRAFT_0156 - Uncharacterized enzyme involved in inositol metabolism, at 103,400 to 104,224 _0156 Position (kb) 100 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 99.668 kb on + strand, within EX28DRAFT_0153at 99.736 kb on - strand, within EX28DRAFT_0153at 99.831 kb on + strand, within EX28DRAFT_0153at 99.831 kb on + strand, within EX28DRAFT_0153at 99.832 kb on - strand, within EX28DRAFT_0153at 99.832 kb on - strand, within EX28DRAFT_0153at 99.832 kb on - strand, within EX28DRAFT_0153at 99.927 kb on + strand, within EX28DRAFT_0153at 99.927 kb on + strand, within EX28DRAFT_0153at 99.927 kb on + strand, within EX28DRAFT_0153at 99.927 kb on + strand, within EX28DRAFT_0153at 99.927 kb on + strand, within EX28DRAFT_0153at 99.927 kb on + strand, within EX28DRAFT_0153at 99.928 kb on - strand, within EX28DRAFT_0153at 99.928 kb on - strand, within EX28DRAFT_0153at 99.928 kb on - strand, within EX28DRAFT_0153at 99.930 kb on - strand, within EX28DRAFT_0153at 100.231 kb on - strand, within EX28DRAFT_0153at 100.231 kb on - strand, within EX28DRAFT_0153at 100.296 kb on + strand, within EX28DRAFT_0153at 100.296 kb on + strand, within EX28DRAFT_0153at 100.297 kb on - strand, within EX28DRAFT_0153at 100.577 kb on + strandat 100.636 kb on - strandat 100.636 kb on - strandat 100.775 kb on + strand, within EX28DRAFT_0154at 100.775 kb on + strand, within EX28DRAFT_0154at 100.775 kb on + strand, within EX28DRAFT_0154at 100.776 kb on - strand, within EX28DRAFT_0154at 100.776 kb on - strand, within EX28DRAFT_0154at 100.776 kb on - strand, within EX28DRAFT_0154at 100.962 kb on + strand, within EX28DRAFT_0154at 100.962 kb on + strand, within EX28DRAFT_0154at 100.962 kb on + strand, within EX28DRAFT_0154at 100.963 kb on - strand, within EX28DRAFT_0154at 100.963 kb on - strand, within EX28DRAFT_0154at 100.963 kb on - strand, within EX28DRAFT_0154at 100.963 kb on - strand, within EX28DRAFT_0154at 101.050 kb on - strand, within EX28DRAFT_0154at 101.050 kb on - strand, within EX28DRAFT_0154at 101.068 kb on + strand, within EX28DRAFT_0154at 101.123 kb on - strand, within EX28DRAFT_0154at 102.052 kb on - strand, within EX28DRAFT_0154at 102.132 kb on + strand, within EX28DRAFT_0154at 102.157 kb on - strand, within EX28DRAFT_0154at 102.172 kb on - strand, within EX28DRAFT_0154at 102.340 kb on + strandat 102.340 kb on + strandat 102.340 kb on + strandat 102.444 kb on + strandat 102.444 kb on + strandat 102.444 kb on + strandat 102.444 kb on + strandat 102.445 kb on - strandat 102.445 kb on - strandat 102.513 kb on + strandat 102.707 kb on + strand, within EX28DRAFT_0155at 102.893 kb on + strand, within EX28DRAFT_0155at 102.925 kb on + strand, within EX28DRAFT_0155at 103.126 kb on + strand, within EX28DRAFT_0155at 103.126 kb on + strand, within EX28DRAFT_0155at 103.207 kb on + strand, within EX28DRAFT_0155at 103.272 kb on - strand, within EX28DRAFT_0155at 103.346 kb on + strandat 103.347 kb on - strandat 103.348 kb on + strandat 103.349 kb on - strandat 103.349 kb on - strandat 103.388 kb on + strandat 103.389 kb on - strandat 103.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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99,668 + EX28DRAFT_0153 0.20 -3.1
99,736 - EX28DRAFT_0153 0.26 -0.3
99,831 + EX28DRAFT_0153 0.35 -0.2
99,831 + EX28DRAFT_0153 0.35 -1.4
99,832 - EX28DRAFT_0153 0.35 -0.8
99,832 - EX28DRAFT_0153 0.35 +0.3
99,832 - EX28DRAFT_0153 0.35 -0.6
99,927 + EX28DRAFT_0153 0.43 +0.8
99,927 + EX28DRAFT_0153 0.43 +1.1
99,927 + EX28DRAFT_0153 0.43 -2.6
99,927 + EX28DRAFT_0153 0.43 +2.6
99,927 + EX28DRAFT_0153 0.43 -0.1
99,927 + EX28DRAFT_0153 0.43 +0.4
99,928 - EX28DRAFT_0153 0.43 -0.4
99,928 - EX28DRAFT_0153 0.43 -2.6
99,928 - EX28DRAFT_0153 0.43 +0.8
99,930 - EX28DRAFT_0153 0.43 -1.1
100,231 - EX28DRAFT_0153 0.70 +0.7
100,231 - EX28DRAFT_0153 0.70 -0.8
100,296 + EX28DRAFT_0153 0.76 -1.4
100,296 + EX28DRAFT_0153 0.76 +2.2
100,297 - EX28DRAFT_0153 0.76 -0.1
100,577 + -0.9
100,636 - +0.2
100,636 - +0.2
100,775 + EX28DRAFT_0154 0.10 -0.1
100,775 + EX28DRAFT_0154 0.10 -0.4
100,775 + EX28DRAFT_0154 0.10 -0.1
100,776 - EX28DRAFT_0154 0.10 +1.4
100,776 - EX28DRAFT_0154 0.10 -0.0
100,776 - EX28DRAFT_0154 0.10 -2.4
100,962 + EX28DRAFT_0154 0.20 -2.0
100,962 + EX28DRAFT_0154 0.20 +0.1
100,962 + EX28DRAFT_0154 0.20 -0.2
100,963 - EX28DRAFT_0154 0.20 +1.5
100,963 - EX28DRAFT_0154 0.20 -1.6
100,963 - EX28DRAFT_0154 0.20 -0.1
100,963 - EX28DRAFT_0154 0.20 +0.1
101,050 - EX28DRAFT_0154 0.24 -3.2
101,050 - EX28DRAFT_0154 0.24 -1.0
101,068 + EX28DRAFT_0154 0.25 +0.1
101,123 - EX28DRAFT_0154 0.28 -0.3
102,052 - EX28DRAFT_0154 0.77 -3.3
102,132 + EX28DRAFT_0154 0.81 -0.3
102,157 - EX28DRAFT_0154 0.83 +0.1
102,172 - EX28DRAFT_0154 0.83 -1.6
102,340 + -0.2
102,340 + -1.3
102,340 + -1.7
102,444 + -0.8
102,444 + -0.1
102,444 + -0.3
102,444 + -0.6
102,445 - -0.9
102,445 - +3.1
102,513 + +1.2
102,707 + EX28DRAFT_0155 0.23 -0.8
102,893 + EX28DRAFT_0155 0.44 +0.1
102,925 + EX28DRAFT_0155 0.48 -2.3
103,126 + EX28DRAFT_0155 0.70 +2.0
103,126 + EX28DRAFT_0155 0.70 +0.4
103,207 + EX28DRAFT_0155 0.79 -0.9
103,272 - EX28DRAFT_0155 0.87 -2.2
103,346 + -0.0
103,347 - +0.4
103,348 + +0.9
103,349 - -2.1
103,349 - -0.5
103,388 + +0.1
103,389 - -1.0
103,413 + -1.0

Or see this region's nucleotide sequence