Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0105 and EX28DRAFT_0106 are separated by 59 nucleotides EX28DRAFT_0106 and EX28DRAFT_0107 are separated by 131 nucleotides
EX28DRAFT_0105: EX28DRAFT_0105 - ABC-type uncharacterized transport system, permease component, at 45,946 to 46,926
_0105
EX28DRAFT_0106: EX28DRAFT_0106 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 46,986 to 47,789
_0106
EX28DRAFT_0107: EX28DRAFT_0107 - RNA methyltransferase, TrmH family, group 1, at 47,921 to 48,646
_0107
Position (kb) 46
47
48 Strain fitness (log2 ratio) -2
-1
0
1
2 at 46.080 kb on + strand, within EX28DRAFT_0105 at 46.081 kb on - strand, within EX28DRAFT_0105 at 46.182 kb on + strand, within EX28DRAFT_0105 at 46.183 kb on - strand, within EX28DRAFT_0105 at 46.183 kb on - strand, within EX28DRAFT_0105 at 46.186 kb on + strand, within EX28DRAFT_0105 at 46.187 kb on - strand, within EX28DRAFT_0105 at 46.284 kb on + strand, within EX28DRAFT_0105 at 46.285 kb on - strand, within EX28DRAFT_0105 at 46.352 kb on + strand, within EX28DRAFT_0105 at 46.353 kb on - strand, within EX28DRAFT_0105 at 46.605 kb on + strand, within EX28DRAFT_0105 at 46.660 kb on - strand, within EX28DRAFT_0105 at 46.660 kb on - strand, within EX28DRAFT_0105 at 46.794 kb on + strand, within EX28DRAFT_0105 at 46.929 kb on + strand at 46.974 kb on + strand at 46.979 kb on - strand at 48.255 kb on + strand, within EX28DRAFT_0107 at 48.256 kb on - strand, within EX28DRAFT_0107 at 48.309 kb on - strand, within EX28DRAFT_0107 at 48.392 kb on - strand, within EX28DRAFT_0107 at 48.446 kb on + strand, within EX28DRAFT_0107 at 48.477 kb on - strand, within EX28DRAFT_0107 at 48.594 kb on + strand at 48.637 kb on + strand at 48.644 kb on + strand at 48.644 kb on + strand at 48.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 46,080 + EX28DRAFT_0105 0.14 +0.5 46,081 - EX28DRAFT_0105 0.14 +0.6 46,182 + EX28DRAFT_0105 0.24 -0.2 46,183 - EX28DRAFT_0105 0.24 -2.0 46,183 - EX28DRAFT_0105 0.24 +0.4 46,186 + EX28DRAFT_0105 0.24 -0.4 46,187 - EX28DRAFT_0105 0.25 +0.2 46,284 + EX28DRAFT_0105 0.34 -0.7 46,285 - EX28DRAFT_0105 0.35 -1.6 46,352 + EX28DRAFT_0105 0.41 -0.4 46,353 - EX28DRAFT_0105 0.41 -0.9 46,605 + EX28DRAFT_0105 0.67 +0.3 46,660 - EX28DRAFT_0105 0.73 -1.2 46,660 - EX28DRAFT_0105 0.73 +2.1 46,794 + EX28DRAFT_0105 0.86 -0.1 46,929 + -1.1 46,974 + +0.9 46,979 - -0.5 48,255 + EX28DRAFT_0107 0.46 +0.5 48,256 - EX28DRAFT_0107 0.46 +1.9 48,309 - EX28DRAFT_0107 0.53 -0.1 48,392 - EX28DRAFT_0107 0.65 +0.1 48,446 + EX28DRAFT_0107 0.72 +1.1 48,477 - EX28DRAFT_0107 0.77 -2.0 48,594 + -0.8 48,637 + +1.3 48,644 + -1.0 48,644 + +1.2 48,645 - +1.0
Or see this region's nucleotide sequence