Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0085 and EX28DRAFT_0086 are separated by 117 nucleotides EX28DRAFT_0086 and EX28DRAFT_0087 are separated by 11 nucleotides
EX28DRAFT_0085: EX28DRAFT_0085 - transcriptional regulator, RpiR family, at 24,251 to 25,099
_0085
EX28DRAFT_0086: EX28DRAFT_0086 - N-acetylmuramic acid 6-phosphate etherase, at 25,217 to 26,110
_0086
EX28DRAFT_0087: EX28DRAFT_0087 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, at 26,122 to 27,483
_0087
Position (kb) 25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.244 kb on - strand at 24.245 kb on + strand at 24.245 kb on + strand at 24.246 kb on - strand at 24.412 kb on + strand, within EX28DRAFT_0085 at 24.413 kb on - strand, within EX28DRAFT_0085 at 24.413 kb on - strand, within EX28DRAFT_0085 at 24.414 kb on + strand, within EX28DRAFT_0085 at 24.414 kb on + strand, within EX28DRAFT_0085 at 24.416 kb on + strand, within EX28DRAFT_0085 at 24.416 kb on + strand, within EX28DRAFT_0085 at 24.417 kb on - strand, within EX28DRAFT_0085 at 24.417 kb on - strand, within EX28DRAFT_0085 at 24.538 kb on - strand, within EX28DRAFT_0085 at 24.920 kb on - strand, within EX28DRAFT_0085 at 25.089 kb on - strand at 25.100 kb on - strand at 25.319 kb on - strand, within EX28DRAFT_0086 at 25.416 kb on - strand, within EX28DRAFT_0086 at 25.416 kb on - strand, within EX28DRAFT_0086 at 25.416 kb on - strand, within EX28DRAFT_0086 at 25.598 kb on - strand, within EX28DRAFT_0086 at 25.652 kb on + strand, within EX28DRAFT_0086 at 25.653 kb on - strand, within EX28DRAFT_0086 at 25.834 kb on + strand, within EX28DRAFT_0086 at 25.874 kb on + strand, within EX28DRAFT_0086 at 26.108 kb on + strand at 26.121 kb on + strand at 26.431 kb on + strand, within EX28DRAFT_0087 at 26.499 kb on + strand, within EX28DRAFT_0087 at 26.576 kb on - strand, within EX28DRAFT_0087 at 27.088 kb on + strand, within EX28DRAFT_0087 at 27.090 kb on + strand, within EX28DRAFT_0087
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 24,244 - -0.5 24,245 + -3.0 24,245 + -1.3 24,246 - +1.2 24,412 + EX28DRAFT_0085 0.19 -1.1 24,413 - EX28DRAFT_0085 0.19 -2.4 24,413 - EX28DRAFT_0085 0.19 -0.2 24,414 + EX28DRAFT_0085 0.19 -0.9 24,414 + EX28DRAFT_0085 0.19 -1.0 24,416 + EX28DRAFT_0085 0.19 -2.4 24,416 + EX28DRAFT_0085 0.19 -0.1 24,417 - EX28DRAFT_0085 0.20 -1.3 24,417 - EX28DRAFT_0085 0.20 -0.2 24,538 - EX28DRAFT_0085 0.34 +0.2 24,920 - EX28DRAFT_0085 0.79 +0.1 25,089 - -0.6 25,100 - +0.3 25,319 - EX28DRAFT_0086 0.11 -0.5 25,416 - EX28DRAFT_0086 0.22 -2.8 25,416 - EX28DRAFT_0086 0.22 +1.8 25,416 - EX28DRAFT_0086 0.22 +0.7 25,598 - EX28DRAFT_0086 0.43 -0.2 25,652 + EX28DRAFT_0086 0.49 -0.7 25,653 - EX28DRAFT_0086 0.49 -0.5 25,834 + EX28DRAFT_0086 0.69 +0.7 25,874 + EX28DRAFT_0086 0.73 +0.1 26,108 + +0.5 26,121 + -0.3 26,431 + EX28DRAFT_0087 0.23 -1.5 26,499 + EX28DRAFT_0087 0.28 +2.1 26,576 - EX28DRAFT_0087 0.33 -1.0 27,088 + EX28DRAFT_0087 0.71 +0.5 27,090 + EX28DRAFT_0087 0.71 -1.4
Or see this region's nucleotide sequence