Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0039 and EX28DRAFT_0040 are separated by 76 nucleotides EX28DRAFT_0040 and EX28DRAFT_0041 are separated by 25 nucleotides EX28DRAFT_0041 and EX28DRAFT_0042 are separated by 112 nucleotides
EX28DRAFT_0039: EX28DRAFT_0039 - 16S rRNA (cytosine(967)-C(5))-methyltransferase, at 19,052 to 20,314
_0039
EX28DRAFT_0040: EX28DRAFT_0040 - methionyl-tRNA formyltransferase, at 20,391 to 21,338
_0040
EX28DRAFT_0041: EX28DRAFT_0041 - peptide deformylase, at 21,364 to 21,873
_0041
EX28DRAFT_0042: EX28DRAFT_0042 - DNA protecting protein DprA, at 21,986 to 23,125
_0042
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 19.553 kb on - strand, within EX28DRAFT_0039 at 19.653 kb on - strand, within EX28DRAFT_0039 at 19.691 kb on + strand, within EX28DRAFT_0039 at 19.715 kb on + strand, within EX28DRAFT_0039 at 20.086 kb on - strand, within EX28DRAFT_0039 at 20.099 kb on - strand, within EX28DRAFT_0039 at 20.107 kb on - strand, within EX28DRAFT_0039 at 20.112 kb on - strand, within EX28DRAFT_0039 at 20.268 kb on - strand at 20.321 kb on + strand at 20.322 kb on - strand at 20.383 kb on - strand at 21.398 kb on - strand at 21.904 kb on - strand at 21.910 kb on - strand at 21.919 kb on - strand at 21.924 kb on - strand at 22.032 kb on + strand at 22.032 kb on + strand at 22.033 kb on - strand at 22.033 kb on - strand at 22.059 kb on + strand at 22.060 kb on - strand at 22.060 kb on - strand at 22.060 kb on - strand at 22.288 kb on - strand, within EX28DRAFT_0042 at 22.291 kb on + strand, within EX28DRAFT_0042 at 22.315 kb on + strand, within EX28DRAFT_0042 at 22.315 kb on + strand, within EX28DRAFT_0042 at 22.318 kb on + strand, within EX28DRAFT_0042 at 22.318 kb on + strand, within EX28DRAFT_0042
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 19,553 - EX28DRAFT_0039 0.40 +0.5 19,653 - EX28DRAFT_0039 0.48 -1.6 19,691 + EX28DRAFT_0039 0.51 -0.6 19,715 + EX28DRAFT_0039 0.52 +0.6 20,086 - EX28DRAFT_0039 0.82 +0.7 20,099 - EX28DRAFT_0039 0.83 +1.1 20,107 - EX28DRAFT_0039 0.84 +0.7 20,112 - EX28DRAFT_0039 0.84 +1.3 20,268 - -0.2 20,321 + -1.0 20,322 - -0.1 20,383 - +0.0 21,398 - +0.2 21,904 - +0.8 21,910 - +1.0 21,919 - +0.8 21,924 - +1.6 22,032 + -1.2 22,032 + +4.5 22,033 - +1.6 22,033 - +0.2 22,059 + +0.2 22,060 - +0.4 22,060 - -0.9 22,060 - +0.6 22,288 - EX28DRAFT_0042 0.26 +1.6 22,291 + EX28DRAFT_0042 0.27 -0.1 22,315 + EX28DRAFT_0042 0.29 +0.6 22,315 + EX28DRAFT_0042 0.29 +2.5 22,318 + EX28DRAFT_0042 0.29 +0.1 22,318 + EX28DRAFT_0042 0.29 +2.0
Or see this region's nucleotide sequence