Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS19165 and ABIE41_RS19170 are separated by 57 nucleotides ABIE41_RS19170 and ABIE41_RS19175 are separated by 222 nucleotides
ABIE41_RS19165: ABIE41_RS19165 - homoserine dehydrogenase, at 3,954,112 to 3,955,458
_RS19165
ABIE41_RS19170: ABIE41_RS19170 - hypothetical protein, at 3,955,516 to 3,955,947
_RS19170
ABIE41_RS19175: ABIE41_RS19175 - LL-diaminopimelate aminotransferase, at 3,956,170 to 3,957,390
_RS19175
Position (kb)
3955
3956 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3954.939 kb on - strand, within ABIE41_RS19165 at 3954.939 kb on - strand, within ABIE41_RS19165 at 3954.939 kb on - strand, within ABIE41_RS19165 at 3955.925 kb on - strand at 3956.004 kb on + strand at 3956.004 kb on + strand at 3956.094 kb on + strand at 3956.160 kb on + strand at 3956.160 kb on + strand at 3956.161 kb on - strand at 3956.172 kb on - strand at 3956.294 kb on + strand, within ABIE41_RS19175 at 3956.294 kb on + strand, within ABIE41_RS19175 at 3956.295 kb on - strand, within ABIE41_RS19175 at 3956.295 kb on - strand, within ABIE41_RS19175 at 3956.498 kb on + strand, within ABIE41_RS19175 at 3956.498 kb on + strand, within ABIE41_RS19175 at 3956.498 kb on + strand, within ABIE41_RS19175 at 3956.498 kb on + strand, within ABIE41_RS19175 at 3956.499 kb on - strand, within ABIE41_RS19175 at 3956.499 kb on - strand, within ABIE41_RS19175 at 3956.499 kb on - strand, within ABIE41_RS19175 at 3956.571 kb on + strand, within ABIE41_RS19175 at 3956.572 kb on - strand, within ABIE41_RS19175 at 3956.572 kb on - strand, within ABIE41_RS19175 at 3956.572 kb on - strand, within ABIE41_RS19175 at 3956.573 kb on + strand, within ABIE41_RS19175 at 3956.583 kb on - strand, within ABIE41_RS19175 at 3956.583 kb on - strand, within ABIE41_RS19175 at 3956.583 kb on - strand, within ABIE41_RS19175 at 3956.759 kb on + strand, within ABIE41_RS19175 at 3956.760 kb on - strand, within ABIE41_RS19175 at 3956.771 kb on + strand, within ABIE41_RS19175 at 3956.831 kb on + strand, within ABIE41_RS19175 at 3956.852 kb on + strand, within ABIE41_RS19175 at 3956.853 kb on - strand, within ABIE41_RS19175
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 3,954,939 - ABIE41_RS19165 0.61 -3.4 3,954,939 - ABIE41_RS19165 0.61 -0.1 3,954,939 - ABIE41_RS19165 0.61 -2.2 3,955,925 - -0.9 3,956,004 + -1.0 3,956,004 + -0.1 3,956,094 + +0.2 3,956,160 + -0.1 3,956,160 + +0.7 3,956,161 - -0.2 3,956,172 - +0.8 3,956,294 + ABIE41_RS19175 0.10 -0.3 3,956,294 + ABIE41_RS19175 0.10 +0.1 3,956,295 - ABIE41_RS19175 0.10 -2.3 3,956,295 - ABIE41_RS19175 0.10 -0.1 3,956,498 + ABIE41_RS19175 0.27 +0.3 3,956,498 + ABIE41_RS19175 0.27 -0.4 3,956,498 + ABIE41_RS19175 0.27 -1.0 3,956,498 + ABIE41_RS19175 0.27 +0.5 3,956,499 - ABIE41_RS19175 0.27 -0.3 3,956,499 - ABIE41_RS19175 0.27 -1.1 3,956,499 - ABIE41_RS19175 0.27 -0.6 3,956,571 + ABIE41_RS19175 0.33 -0.2 3,956,572 - ABIE41_RS19175 0.33 -1.4 3,956,572 - ABIE41_RS19175 0.33 +0.2 3,956,572 - ABIE41_RS19175 0.33 +0.5 3,956,573 + ABIE41_RS19175 0.33 +1.1 3,956,583 - ABIE41_RS19175 0.34 -0.7 3,956,583 - ABIE41_RS19175 0.34 -0.9 3,956,583 - ABIE41_RS19175 0.34 +0.4 3,956,759 + ABIE41_RS19175 0.48 +0.5 3,956,760 - ABIE41_RS19175 0.48 -2.5 3,956,771 + ABIE41_RS19175 0.49 -1.1 3,956,831 + ABIE41_RS19175 0.54 +0.6 3,956,852 + ABIE41_RS19175 0.56 -0.0 3,956,853 - ABIE41_RS19175 0.56 -0.1
Or see this region's nucleotide sequence