Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08650 and ABIE41_RS08655 are separated by 235 nucleotides ABIE41_RS08655 and ABIE41_RS08660 are separated by 127 nucleotides ABIE41_RS08660 and ABIE41_RS08665 are separated by 205 nucleotides
ABIE41_RS08650: ABIE41_RS08650 - methyl-accepting chemotaxis protein, at 1,789,099 to 1,791,450
_RS08650
ABIE41_RS08655: ABIE41_RS08655 - mucoidy inhibitor MuiA family protein, at 1,791,686 to 1,793,404
_RS08655
ABIE41_RS08660: ABIE41_RS08660 - protein-tyrosine-phosphatase, at 1,793,532 to 1,794,110
_RS08660
ABIE41_RS08665: ABIE41_RS08665 - amidohydrolase, at 1,794,316 to 1,795,527
_RS08665
Position (kb)
1791
1792
1793
1794 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1791.649 kb on + strand at 1791.669 kb on + strand at 1791.669 kb on + strand at 1791.670 kb on - strand at 1791.670 kb on - strand at 1792.346 kb on + strand, within ABIE41_RS08655 at 1792.347 kb on - strand, within ABIE41_RS08655 at 1792.379 kb on + strand, within ABIE41_RS08655 at 1792.379 kb on + strand, within ABIE41_RS08655 at 1792.380 kb on - strand, within ABIE41_RS08655 at 1792.395 kb on + strand, within ABIE41_RS08655 at 1792.546 kb on - strand, within ABIE41_RS08655 at 1792.546 kb on - strand, within ABIE41_RS08655 at 1792.577 kb on + strand, within ABIE41_RS08655 at 1792.578 kb on - strand, within ABIE41_RS08655 at 1792.730 kb on + strand, within ABIE41_RS08655 at 1792.858 kb on + strand, within ABIE41_RS08655 at 1792.859 kb on - strand, within ABIE41_RS08655 at 1792.865 kb on + strand, within ABIE41_RS08655 at 1792.866 kb on - strand, within ABIE41_RS08655 at 1792.866 kb on - strand, within ABIE41_RS08655 at 1792.943 kb on + strand, within ABIE41_RS08655 at 1792.943 kb on + strand, within ABIE41_RS08655 at 1792.943 kb on + strand, within ABIE41_RS08655 at 1792.943 kb on + strand, within ABIE41_RS08655 at 1792.943 kb on + strand, within ABIE41_RS08655 at 1792.943 kb on + strand, within ABIE41_RS08655 at 1792.943 kb on + strand, within ABIE41_RS08655 at 1792.943 kb on + strand, within ABIE41_RS08655 at 1792.943 kb on + strand, within ABIE41_RS08655 at 1792.943 kb on + strand, within ABIE41_RS08655 at 1792.944 kb on - strand, within ABIE41_RS08655 at 1792.944 kb on - strand, within ABIE41_RS08655 at 1792.944 kb on - strand, within ABIE41_RS08655 at 1792.944 kb on - strand, within ABIE41_RS08655 at 1792.944 kb on - strand, within ABIE41_RS08655 at 1792.944 kb on - strand, within ABIE41_RS08655 at 1792.944 kb on - strand, within ABIE41_RS08655 at 1792.944 kb on - strand, within ABIE41_RS08655 at 1792.944 kb on - strand, within ABIE41_RS08655 at 1792.945 kb on + strand, within ABIE41_RS08655 at 1792.945 kb on + strand, within ABIE41_RS08655 at 1793.190 kb on + strand, within ABIE41_RS08655 at 1793.191 kb on - strand, within ABIE41_RS08655 at 1793.345 kb on + strand at 1793.345 kb on + strand at 1793.345 kb on + strand at 1793.346 kb on - strand at 1793.346 kb on - strand at 1793.346 kb on - strand at 1793.346 kb on - strand at 1793.346 kb on - strand at 1793.587 kb on + strand at 1793.587 kb on + strand at 1793.588 kb on - strand at 1793.588 kb on - strand at 1793.617 kb on + strand, within ABIE41_RS08660 at 1793.618 kb on - strand, within ABIE41_RS08660 at 1793.772 kb on + strand, within ABIE41_RS08660 at 1793.772 kb on + strand, within ABIE41_RS08660 at 1793.772 kb on + strand, within ABIE41_RS08660 at 1793.773 kb on - strand, within ABIE41_RS08660 at 1793.810 kb on + strand, within ABIE41_RS08660 at 1793.810 kb on + strand, within ABIE41_RS08660 at 1793.811 kb on - strand, within ABIE41_RS08660 at 1793.977 kb on + strand, within ABIE41_RS08660 at 1793.977 kb on + strand, within ABIE41_RS08660 at 1793.978 kb on - strand, within ABIE41_RS08660 at 1793.978 kb on - strand, within ABIE41_RS08660 at 1794.050 kb on + strand, within ABIE41_RS08660 at 1794.051 kb on - strand, within ABIE41_RS08660 at 1794.051 kb on - strand, within ABIE41_RS08660 at 1794.316 kb on + strand at 1794.317 kb on + strand at 1794.317 kb on + strand at 1794.318 kb on - strand at 1794.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,791,649 + -1.0 1,791,669 + -1.5 1,791,669 + -1.0 1,791,670 - -0.2 1,791,670 - +0.3 1,792,346 + ABIE41_RS08655 0.38 -0.3 1,792,347 - ABIE41_RS08655 0.38 -0.3 1,792,379 + ABIE41_RS08655 0.40 +0.6 1,792,379 + ABIE41_RS08655 0.40 -0.0 1,792,380 - ABIE41_RS08655 0.40 +0.5 1,792,395 + ABIE41_RS08655 0.41 +0.6 1,792,546 - ABIE41_RS08655 0.50 -0.3 1,792,546 - ABIE41_RS08655 0.50 -1.3 1,792,577 + ABIE41_RS08655 0.52 -1.5 1,792,578 - ABIE41_RS08655 0.52 +0.1 1,792,730 + ABIE41_RS08655 0.61 +0.3 1,792,858 + ABIE41_RS08655 0.68 -0.1 1,792,859 - ABIE41_RS08655 0.68 -1.5 1,792,865 + ABIE41_RS08655 0.69 -0.5 1,792,866 - ABIE41_RS08655 0.69 -0.8 1,792,866 - ABIE41_RS08655 0.69 -1.0 1,792,943 + ABIE41_RS08655 0.73 -0.8 1,792,943 + ABIE41_RS08655 0.73 -1.8 1,792,943 + ABIE41_RS08655 0.73 -0.0 1,792,943 + ABIE41_RS08655 0.73 -2.3 1,792,943 + ABIE41_RS08655 0.73 -0.1 1,792,943 + ABIE41_RS08655 0.73 -0.5 1,792,943 + ABIE41_RS08655 0.73 -1.6 1,792,943 + ABIE41_RS08655 0.73 +0.0 1,792,943 + ABIE41_RS08655 0.73 +0.1 1,792,943 + ABIE41_RS08655 0.73 -0.2 1,792,944 - ABIE41_RS08655 0.73 -0.6 1,792,944 - ABIE41_RS08655 0.73 -0.1 1,792,944 - ABIE41_RS08655 0.73 +1.5 1,792,944 - ABIE41_RS08655 0.73 +0.4 1,792,944 - ABIE41_RS08655 0.73 +0.7 1,792,944 - ABIE41_RS08655 0.73 +0.3 1,792,944 - ABIE41_RS08655 0.73 -0.4 1,792,944 - ABIE41_RS08655 0.73 +0.5 1,792,944 - ABIE41_RS08655 0.73 -0.7 1,792,945 + ABIE41_RS08655 0.73 +0.5 1,792,945 + ABIE41_RS08655 0.73 -0.1 1,793,190 + ABIE41_RS08655 0.87 -2.2 1,793,191 - ABIE41_RS08655 0.88 -2.9 1,793,345 + -0.2 1,793,345 + -0.1 1,793,345 + -0.2 1,793,346 - -0.3 1,793,346 - -0.4 1,793,346 - +0.5 1,793,346 - +0.1 1,793,346 - -0.2 1,793,587 + +1.7 1,793,587 + +1.2 1,793,588 - -2.2 1,793,588 - -2.3 1,793,617 + ABIE41_RS08660 0.15 +1.0 1,793,618 - ABIE41_RS08660 0.15 -0.2 1,793,772 + ABIE41_RS08660 0.41 -1.3 1,793,772 + ABIE41_RS08660 0.41 -0.5 1,793,772 + ABIE41_RS08660 0.41 -1.6 1,793,773 - ABIE41_RS08660 0.42 +0.4 1,793,810 + ABIE41_RS08660 0.48 +0.1 1,793,810 + ABIE41_RS08660 0.48 +0.3 1,793,811 - ABIE41_RS08660 0.48 +0.6 1,793,977 + ABIE41_RS08660 0.77 +0.5 1,793,977 + ABIE41_RS08660 0.77 +0.4 1,793,978 - ABIE41_RS08660 0.77 -0.4 1,793,978 - ABIE41_RS08660 0.77 +1.1 1,794,050 + ABIE41_RS08660 0.89 +0.3 1,794,051 - ABIE41_RS08660 0.90 +0.9 1,794,051 - ABIE41_RS08660 0.90 -0.5 1,794,316 + -0.1 1,794,317 + -2.2 1,794,317 + -0.8 1,794,318 - +0.1 1,794,318 - -1.9
Or see this region's nucleotide sequence