Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08655

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08650 and ABIE41_RS08655 are separated by 235 nucleotidesABIE41_RS08655 and ABIE41_RS08660 are separated by 127 nucleotidesABIE41_RS08660 and ABIE41_RS08665 are separated by 205 nucleotides ABIE41_RS08650: ABIE41_RS08650 - methyl-accepting chemotaxis protein, at 1,789,099 to 1,791,450 _RS08650 ABIE41_RS08655: ABIE41_RS08655 - mucoidy inhibitor MuiA family protein, at 1,791,686 to 1,793,404 _RS08655 ABIE41_RS08660: ABIE41_RS08660 - protein-tyrosine-phosphatase, at 1,793,532 to 1,794,110 _RS08660 ABIE41_RS08665: ABIE41_RS08665 - amidohydrolase, at 1,794,316 to 1,795,527 _RS08665 Position (kb) 1791 1792 1793 1794Strain fitness (log2 ratio) -3 -2 -1 0 1at 1791.649 kb on + strandat 1791.669 kb on + strandat 1791.669 kb on + strandat 1791.670 kb on - strandat 1791.670 kb on - strandat 1792.346 kb on + strand, within ABIE41_RS08655at 1792.347 kb on - strand, within ABIE41_RS08655at 1792.379 kb on + strand, within ABIE41_RS08655at 1792.379 kb on + strand, within ABIE41_RS08655at 1792.380 kb on - strand, within ABIE41_RS08655at 1792.395 kb on + strand, within ABIE41_RS08655at 1792.546 kb on - strand, within ABIE41_RS08655at 1792.546 kb on - strand, within ABIE41_RS08655at 1792.577 kb on + strand, within ABIE41_RS08655at 1792.578 kb on - strand, within ABIE41_RS08655at 1792.730 kb on + strand, within ABIE41_RS08655at 1792.858 kb on + strand, within ABIE41_RS08655at 1792.859 kb on - strand, within ABIE41_RS08655at 1792.865 kb on + strand, within ABIE41_RS08655at 1792.866 kb on - strand, within ABIE41_RS08655at 1792.866 kb on - strand, within ABIE41_RS08655at 1792.943 kb on + strand, within ABIE41_RS08655at 1792.943 kb on + strand, within ABIE41_RS08655at 1792.943 kb on + strand, within ABIE41_RS08655at 1792.943 kb on + strand, within ABIE41_RS08655at 1792.943 kb on + strand, within ABIE41_RS08655at 1792.943 kb on + strand, within ABIE41_RS08655at 1792.943 kb on + strand, within ABIE41_RS08655at 1792.943 kb on + strand, within ABIE41_RS08655at 1792.943 kb on + strand, within ABIE41_RS08655at 1792.943 kb on + strand, within ABIE41_RS08655at 1792.944 kb on - strand, within ABIE41_RS08655at 1792.944 kb on - strand, within ABIE41_RS08655at 1792.944 kb on - strand, within ABIE41_RS08655at 1792.944 kb on - strand, within ABIE41_RS08655at 1792.944 kb on - strand, within ABIE41_RS08655at 1792.944 kb on - strand, within ABIE41_RS08655at 1792.944 kb on - strand, within ABIE41_RS08655at 1792.944 kb on - strand, within ABIE41_RS08655at 1792.944 kb on - strand, within ABIE41_RS08655at 1792.945 kb on + strand, within ABIE41_RS08655at 1792.945 kb on + strand, within ABIE41_RS08655at 1793.190 kb on + strand, within ABIE41_RS08655at 1793.191 kb on - strand, within ABIE41_RS08655at 1793.345 kb on + strandat 1793.345 kb on + strandat 1793.345 kb on + strandat 1793.346 kb on - strandat 1793.346 kb on - strandat 1793.346 kb on - strandat 1793.346 kb on - strandat 1793.346 kb on - strandat 1793.587 kb on + strandat 1793.587 kb on + strandat 1793.588 kb on - strandat 1793.588 kb on - strandat 1793.617 kb on + strand, within ABIE41_RS08660at 1793.618 kb on - strand, within ABIE41_RS08660at 1793.772 kb on + strand, within ABIE41_RS08660at 1793.772 kb on + strand, within ABIE41_RS08660at 1793.772 kb on + strand, within ABIE41_RS08660at 1793.773 kb on - strand, within ABIE41_RS08660at 1793.810 kb on + strand, within ABIE41_RS08660at 1793.810 kb on + strand, within ABIE41_RS08660at 1793.811 kb on - strand, within ABIE41_RS08660at 1793.977 kb on + strand, within ABIE41_RS08660at 1793.977 kb on + strand, within ABIE41_RS08660at 1793.978 kb on - strand, within ABIE41_RS08660at 1793.978 kb on - strand, within ABIE41_RS08660at 1794.050 kb on + strand, within ABIE41_RS08660at 1794.051 kb on - strand, within ABIE41_RS08660at 1794.051 kb on - strand, within ABIE41_RS08660at 1794.316 kb on + strandat 1794.317 kb on + strandat 1794.317 kb on + strandat 1794.318 kb on - strandat 1794.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,791,649 + -1.0
1,791,669 + -1.5
1,791,669 + -1.0
1,791,670 - -0.2
1,791,670 - +0.3
1,792,346 + ABIE41_RS08655 0.38 -0.3
1,792,347 - ABIE41_RS08655 0.38 -0.3
1,792,379 + ABIE41_RS08655 0.40 +0.6
1,792,379 + ABIE41_RS08655 0.40 -0.0
1,792,380 - ABIE41_RS08655 0.40 +0.5
1,792,395 + ABIE41_RS08655 0.41 +0.6
1,792,546 - ABIE41_RS08655 0.50 -0.3
1,792,546 - ABIE41_RS08655 0.50 -1.3
1,792,577 + ABIE41_RS08655 0.52 -1.5
1,792,578 - ABIE41_RS08655 0.52 +0.1
1,792,730 + ABIE41_RS08655 0.61 +0.3
1,792,858 + ABIE41_RS08655 0.68 -0.1
1,792,859 - ABIE41_RS08655 0.68 -1.5
1,792,865 + ABIE41_RS08655 0.69 -0.5
1,792,866 - ABIE41_RS08655 0.69 -0.8
1,792,866 - ABIE41_RS08655 0.69 -1.0
1,792,943 + ABIE41_RS08655 0.73 -0.8
1,792,943 + ABIE41_RS08655 0.73 -1.8
1,792,943 + ABIE41_RS08655 0.73 -0.0
1,792,943 + ABIE41_RS08655 0.73 -2.3
1,792,943 + ABIE41_RS08655 0.73 -0.1
1,792,943 + ABIE41_RS08655 0.73 -0.5
1,792,943 + ABIE41_RS08655 0.73 -1.6
1,792,943 + ABIE41_RS08655 0.73 +0.0
1,792,943 + ABIE41_RS08655 0.73 +0.1
1,792,943 + ABIE41_RS08655 0.73 -0.2
1,792,944 - ABIE41_RS08655 0.73 -0.6
1,792,944 - ABIE41_RS08655 0.73 -0.1
1,792,944 - ABIE41_RS08655 0.73 +1.5
1,792,944 - ABIE41_RS08655 0.73 +0.4
1,792,944 - ABIE41_RS08655 0.73 +0.7
1,792,944 - ABIE41_RS08655 0.73 +0.3
1,792,944 - ABIE41_RS08655 0.73 -0.4
1,792,944 - ABIE41_RS08655 0.73 +0.5
1,792,944 - ABIE41_RS08655 0.73 -0.7
1,792,945 + ABIE41_RS08655 0.73 +0.5
1,792,945 + ABIE41_RS08655 0.73 -0.1
1,793,190 + ABIE41_RS08655 0.87 -2.2
1,793,191 - ABIE41_RS08655 0.88 -2.9
1,793,345 + -0.2
1,793,345 + -0.1
1,793,345 + -0.2
1,793,346 - -0.3
1,793,346 - -0.4
1,793,346 - +0.5
1,793,346 - +0.1
1,793,346 - -0.2
1,793,587 + +1.7
1,793,587 + +1.2
1,793,588 - -2.2
1,793,588 - -2.3
1,793,617 + ABIE41_RS08660 0.15 +1.0
1,793,618 - ABIE41_RS08660 0.15 -0.2
1,793,772 + ABIE41_RS08660 0.41 -1.3
1,793,772 + ABIE41_RS08660 0.41 -0.5
1,793,772 + ABIE41_RS08660 0.41 -1.6
1,793,773 - ABIE41_RS08660 0.42 +0.4
1,793,810 + ABIE41_RS08660 0.48 +0.1
1,793,810 + ABIE41_RS08660 0.48 +0.3
1,793,811 - ABIE41_RS08660 0.48 +0.6
1,793,977 + ABIE41_RS08660 0.77 +0.5
1,793,977 + ABIE41_RS08660 0.77 +0.4
1,793,978 - ABIE41_RS08660 0.77 -0.4
1,793,978 - ABIE41_RS08660 0.77 +1.1
1,794,050 + ABIE41_RS08660 0.89 +0.3
1,794,051 - ABIE41_RS08660 0.90 +0.9
1,794,051 - ABIE41_RS08660 0.90 -0.5
1,794,316 + -0.1
1,794,317 + -2.2
1,794,317 + -0.8
1,794,318 - +0.1
1,794,318 - -1.9

Or see this region's nucleotide sequence