Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS05730 and ABIE41_RS05735 are separated by 123 nucleotides ABIE41_RS05735 and ABIE41_RS05740 are separated by 18 nucleotides ABIE41_RS05740 and ABIE41_RS05745 are separated by 76 nucleotides
ABIE41_RS05730: ABIE41_RS05730 - FAD-dependent oxidoreductase, at 1,178,693 to 1,179,934
_RS05730
ABIE41_RS05735: ABIE41_RS05735 - succinate dehydrogenase iron-sulfur subunit, at 1,180,058 to 1,180,843
_RS05735
ABIE41_RS05740: ABIE41_RS05740 - hypothetical protein, at 1,180,862 to 1,181,590
_RS05740
ABIE41_RS05745: ABIE41_RS05745 - succinate dehydrogenase flavoprotein subunit, at 1,181,667 to 1,183,499
_RS05745
Position (kb)
1180
1181 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1179.209 kb on - strand, within ABIE41_RS05730 at 1179.209 kb on - strand, within ABIE41_RS05730 at 1179.209 kb on - strand, within ABIE41_RS05730 at 1179.209 kb on - strand, within ABIE41_RS05730 at 1179.309 kb on - strand, within ABIE41_RS05730 at 1179.309 kb on - strand, within ABIE41_RS05730 at 1179.407 kb on - strand, within ABIE41_RS05730 at 1179.407 kb on - strand, within ABIE41_RS05730 at 1179.407 kb on - strand, within ABIE41_RS05730 at 1179.510 kb on - strand, within ABIE41_RS05730 at 1179.560 kb on + strand, within ABIE41_RS05730 at 1179.560 kb on + strand, within ABIE41_RS05730 at 1179.561 kb on - strand, within ABIE41_RS05730 at 1179.561 kb on - strand, within ABIE41_RS05730 at 1179.561 kb on - strand, within ABIE41_RS05730 at 1179.561 kb on - strand, within ABIE41_RS05730 at 1179.561 kb on - strand, within ABIE41_RS05730 at 1179.561 kb on - strand, within ABIE41_RS05730 at 1179.561 kb on - strand, within ABIE41_RS05730 at 1179.561 kb on - strand, within ABIE41_RS05730 at 1179.578 kb on + strand, within ABIE41_RS05730 at 1179.579 kb on - strand, within ABIE41_RS05730 at 1179.579 kb on - strand, within ABIE41_RS05730 at 1179.579 kb on - strand, within ABIE41_RS05730 at 1179.923 kb on + strand at 1179.923 kb on + strand at 1179.923 kb on + strand at 1179.923 kb on + strand at 1179.923 kb on + strand at 1179.923 kb on + strand at 1179.923 kb on + strand at 1179.923 kb on + strand at 1179.923 kb on + strand at 1179.923 kb on + strand at 1179.923 kb on + strand at 1179.924 kb on - strand at 1179.924 kb on - strand at 1179.924 kb on - strand at 1179.924 kb on - strand at 1179.924 kb on - strand at 1179.924 kb on - strand at 1179.925 kb on + strand at 1179.925 kb on + strand at 1179.925 kb on + strand at 1179.926 kb on - strand at 1180.933 kb on - strand at 1180.946 kb on - strand, within ABIE41_RS05740 at 1181.050 kb on - strand, within ABIE41_RS05740 at 1181.062 kb on - strand, within ABIE41_RS05740 at 1181.388 kb on - strand, within ABIE41_RS05740 at 1181.506 kb on - strand, within ABIE41_RS05740 at 1181.513 kb on - strand, within ABIE41_RS05740 at 1181.513 kb on - strand, within ABIE41_RS05740 at 1181.551 kb on - strand at 1181.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,179,209 - ABIE41_RS05730 0.42 +0.6 1,179,209 - ABIE41_RS05730 0.42 +0.6 1,179,209 - ABIE41_RS05730 0.42 -1.8 1,179,209 - ABIE41_RS05730 0.42 +0.7 1,179,309 - ABIE41_RS05730 0.50 -3.0 1,179,309 - ABIE41_RS05730 0.50 +0.4 1,179,407 - ABIE41_RS05730 0.57 -0.7 1,179,407 - ABIE41_RS05730 0.57 -0.1 1,179,407 - ABIE41_RS05730 0.57 +0.1 1,179,510 - ABIE41_RS05730 0.66 +0.5 1,179,560 + ABIE41_RS05730 0.70 -0.0 1,179,560 + ABIE41_RS05730 0.70 +1.6 1,179,561 - ABIE41_RS05730 0.70 +0.2 1,179,561 - ABIE41_RS05730 0.70 -0.2 1,179,561 - ABIE41_RS05730 0.70 -0.4 1,179,561 - ABIE41_RS05730 0.70 -0.3 1,179,561 - ABIE41_RS05730 0.70 -0.6 1,179,561 - ABIE41_RS05730 0.70 +0.1 1,179,561 - ABIE41_RS05730 0.70 -1.0 1,179,561 - ABIE41_RS05730 0.70 +0.1 1,179,578 + ABIE41_RS05730 0.71 -0.7 1,179,579 - ABIE41_RS05730 0.71 +0.9 1,179,579 - ABIE41_RS05730 0.71 -0.2 1,179,579 - ABIE41_RS05730 0.71 +0.5 1,179,923 + +1.1 1,179,923 + +0.0 1,179,923 + +0.3 1,179,923 + -1.4 1,179,923 + -1.2 1,179,923 + +0.6 1,179,923 + -1.4 1,179,923 + +0.5 1,179,923 + +0.1 1,179,923 + -1.8 1,179,923 + -0.0 1,179,924 - -0.6 1,179,924 - -0.4 1,179,924 - +2.1 1,179,924 - +1.7 1,179,924 - -0.7 1,179,924 - +0.4 1,179,925 + -3.7 1,179,925 + +0.6 1,179,925 + -2.7 1,179,926 - -1.2 1,180,933 - -0.1 1,180,946 - ABIE41_RS05740 0.12 -0.2 1,181,050 - ABIE41_RS05740 0.26 +0.2 1,181,062 - ABIE41_RS05740 0.27 -1.9 1,181,388 - ABIE41_RS05740 0.72 -1.4 1,181,506 - ABIE41_RS05740 0.88 +0.2 1,181,513 - ABIE41_RS05740 0.89 -0.2 1,181,513 - ABIE41_RS05740 0.89 +0.3 1,181,551 - +0.3 1,181,585 - +0.7
Or see this region's nucleotide sequence