Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05735

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05730 and ABIE41_RS05735 are separated by 123 nucleotidesABIE41_RS05735 and ABIE41_RS05740 are separated by 18 nucleotidesABIE41_RS05740 and ABIE41_RS05745 are separated by 76 nucleotides ABIE41_RS05730: ABIE41_RS05730 - FAD-dependent oxidoreductase, at 1,178,693 to 1,179,934 _RS05730 ABIE41_RS05735: ABIE41_RS05735 - succinate dehydrogenase iron-sulfur subunit, at 1,180,058 to 1,180,843 _RS05735 ABIE41_RS05740: ABIE41_RS05740 - hypothetical protein, at 1,180,862 to 1,181,590 _RS05740 ABIE41_RS05745: ABIE41_RS05745 - succinate dehydrogenase flavoprotein subunit, at 1,181,667 to 1,183,499 _RS05745 Position (kb) 1180 1181Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1179.209 kb on - strand, within ABIE41_RS05730at 1179.209 kb on - strand, within ABIE41_RS05730at 1179.209 kb on - strand, within ABIE41_RS05730at 1179.209 kb on - strand, within ABIE41_RS05730at 1179.309 kb on - strand, within ABIE41_RS05730at 1179.309 kb on - strand, within ABIE41_RS05730at 1179.407 kb on - strand, within ABIE41_RS05730at 1179.407 kb on - strand, within ABIE41_RS05730at 1179.407 kb on - strand, within ABIE41_RS05730at 1179.510 kb on - strand, within ABIE41_RS05730at 1179.560 kb on + strand, within ABIE41_RS05730at 1179.560 kb on + strand, within ABIE41_RS05730at 1179.561 kb on - strand, within ABIE41_RS05730at 1179.561 kb on - strand, within ABIE41_RS05730at 1179.561 kb on - strand, within ABIE41_RS05730at 1179.561 kb on - strand, within ABIE41_RS05730at 1179.561 kb on - strand, within ABIE41_RS05730at 1179.561 kb on - strand, within ABIE41_RS05730at 1179.561 kb on - strand, within ABIE41_RS05730at 1179.561 kb on - strand, within ABIE41_RS05730at 1179.578 kb on + strand, within ABIE41_RS05730at 1179.579 kb on - strand, within ABIE41_RS05730at 1179.579 kb on - strand, within ABIE41_RS05730at 1179.579 kb on - strand, within ABIE41_RS05730at 1179.923 kb on + strandat 1179.923 kb on + strandat 1179.923 kb on + strandat 1179.923 kb on + strandat 1179.923 kb on + strandat 1179.923 kb on + strandat 1179.923 kb on + strandat 1179.923 kb on + strandat 1179.923 kb on + strandat 1179.923 kb on + strandat 1179.923 kb on + strandat 1179.924 kb on - strandat 1179.924 kb on - strandat 1179.924 kb on - strandat 1179.924 kb on - strandat 1179.924 kb on - strandat 1179.924 kb on - strandat 1179.925 kb on + strandat 1179.925 kb on + strandat 1179.925 kb on + strandat 1179.926 kb on - strandat 1180.933 kb on - strandat 1180.946 kb on - strand, within ABIE41_RS05740at 1181.050 kb on - strand, within ABIE41_RS05740at 1181.062 kb on - strand, within ABIE41_RS05740at 1181.388 kb on - strand, within ABIE41_RS05740at 1181.506 kb on - strand, within ABIE41_RS05740at 1181.513 kb on - strand, within ABIE41_RS05740at 1181.513 kb on - strand, within ABIE41_RS05740at 1181.551 kb on - strandat 1181.585 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,179,209 - ABIE41_RS05730 0.42 +0.6
1,179,209 - ABIE41_RS05730 0.42 +0.6
1,179,209 - ABIE41_RS05730 0.42 -1.8
1,179,209 - ABIE41_RS05730 0.42 +0.7
1,179,309 - ABIE41_RS05730 0.50 -3.0
1,179,309 - ABIE41_RS05730 0.50 +0.4
1,179,407 - ABIE41_RS05730 0.57 -0.7
1,179,407 - ABIE41_RS05730 0.57 -0.1
1,179,407 - ABIE41_RS05730 0.57 +0.1
1,179,510 - ABIE41_RS05730 0.66 +0.5
1,179,560 + ABIE41_RS05730 0.70 -0.0
1,179,560 + ABIE41_RS05730 0.70 +1.6
1,179,561 - ABIE41_RS05730 0.70 +0.2
1,179,561 - ABIE41_RS05730 0.70 -0.2
1,179,561 - ABIE41_RS05730 0.70 -0.4
1,179,561 - ABIE41_RS05730 0.70 -0.3
1,179,561 - ABIE41_RS05730 0.70 -0.6
1,179,561 - ABIE41_RS05730 0.70 +0.1
1,179,561 - ABIE41_RS05730 0.70 -1.0
1,179,561 - ABIE41_RS05730 0.70 +0.1
1,179,578 + ABIE41_RS05730 0.71 -0.7
1,179,579 - ABIE41_RS05730 0.71 +0.9
1,179,579 - ABIE41_RS05730 0.71 -0.2
1,179,579 - ABIE41_RS05730 0.71 +0.5
1,179,923 + +1.1
1,179,923 + +0.0
1,179,923 + +0.3
1,179,923 + -1.4
1,179,923 + -1.2
1,179,923 + +0.6
1,179,923 + -1.4
1,179,923 + +0.5
1,179,923 + +0.1
1,179,923 + -1.8
1,179,923 + -0.0
1,179,924 - -0.6
1,179,924 - -0.4
1,179,924 - +2.1
1,179,924 - +1.7
1,179,924 - -0.7
1,179,924 - +0.4
1,179,925 + -3.7
1,179,925 + +0.6
1,179,925 + -2.7
1,179,926 - -1.2
1,180,933 - -0.1
1,180,946 - ABIE41_RS05740 0.12 -0.2
1,181,050 - ABIE41_RS05740 0.26 +0.2
1,181,062 - ABIE41_RS05740 0.27 -1.9
1,181,388 - ABIE41_RS05740 0.72 -1.4
1,181,506 - ABIE41_RS05740 0.88 +0.2
1,181,513 - ABIE41_RS05740 0.89 -0.2
1,181,513 - ABIE41_RS05740 0.89 +0.3
1,181,551 - +0.3
1,181,585 - +0.7

Or see this region's nucleotide sequence