Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01385

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01375 and ABIE41_RS01380 are separated by 25 nucleotidesABIE41_RS01380 and ABIE41_RS01385 are separated by 92 nucleotidesABIE41_RS01385 and ABIE41_RS01390 are separated by 227 nucleotidesABIE41_RS01390 and ABIE41_RS01395 overlap by 4 nucleotides ABIE41_RS01375: ABIE41_RS01375 - NAD(P)H-quinone oxidoreductase, at 272,023 to 273,024 _RS01375 ABIE41_RS01380: ABIE41_RS01380 - dienelactone hydrolase family protein, at 273,050 to 273,742 _RS01380 ABIE41_RS01385: ABIE41_RS01385 - alpha/beta hydrolase, at 273,835 to 274,926 _RS01385 ABIE41_RS01390: ABIE41_RS01390 - (2Fe-2S)-binding protein, at 275,154 to 275,672 _RS01390 ABIE41_RS01395: ABIE41_RS01395 - xanthine dehydrogenase family protein subunit M, at 275,669 to 276,694 _RS01395 Position (kb) 273 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 273.063 kb on + strandat 273.297 kb on + strand, within ABIE41_RS01380at 273.297 kb on + strand, within ABIE41_RS01380at 273.297 kb on + strand, within ABIE41_RS01380at 273.298 kb on - strand, within ABIE41_RS01380at 273.298 kb on - strand, within ABIE41_RS01380at 273.456 kb on + strand, within ABIE41_RS01380at 273.510 kb on + strand, within ABIE41_RS01380at 273.510 kb on + strand, within ABIE41_RS01380at 273.511 kb on - strand, within ABIE41_RS01380at 273.531 kb on + strand, within ABIE41_RS01380at 273.531 kb on + strand, within ABIE41_RS01380at 273.532 kb on - strand, within ABIE41_RS01380at 273.532 kb on - strand, within ABIE41_RS01380at 273.567 kb on + strand, within ABIE41_RS01380at 273.568 kb on - strand, within ABIE41_RS01380at 273.938 kb on - strandat 273.947 kb on + strand, within ABIE41_RS01385at 273.947 kb on + strand, within ABIE41_RS01385at 273.947 kb on + strand, within ABIE41_RS01385at 273.947 kb on + strand, within ABIE41_RS01385at 273.947 kb on + strand, within ABIE41_RS01385at 273.947 kb on + strand, within ABIE41_RS01385at 273.948 kb on - strand, within ABIE41_RS01385at 274.098 kb on - strand, within ABIE41_RS01385at 274.221 kb on - strand, within ABIE41_RS01385at 274.221 kb on - strand, within ABIE41_RS01385at 274.221 kb on - strand, within ABIE41_RS01385at 274.337 kb on + strand, within ABIE41_RS01385at 274.338 kb on - strand, within ABIE41_RS01385at 274.367 kb on + strand, within ABIE41_RS01385at 274.367 kb on + strand, within ABIE41_RS01385at 274.367 kb on + strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.372 kb on - strand, within ABIE41_RS01385at 274.372 kb on - strand, within ABIE41_RS01385at 274.373 kb on + strand, within ABIE41_RS01385at 274.374 kb on - strand, within ABIE41_RS01385at 274.490 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.581 kb on - strand, within ABIE41_RS01385at 274.581 kb on - strand, within ABIE41_RS01385at 274.581 kb on - strand, within ABIE41_RS01385at 274.581 kb on - strand, within ABIE41_RS01385at 274.665 kb on + strand, within ABIE41_RS01385at 274.665 kb on + strand, within ABIE41_RS01385at 274.666 kb on - strand, within ABIE41_RS01385at 274.941 kb on + strandat 274.941 kb on + strandat 274.942 kb on - strandat 275.484 kb on + strand, within ABIE41_RS01390at 275.484 kb on + strand, within ABIE41_RS01390at 275.485 kb on - strand, within ABIE41_RS01390at 275.485 kb on - strand, within ABIE41_RS01390at 275.485 kb on - strand, within ABIE41_RS01390at 275.598 kb on + strand, within ABIE41_RS01390at 275.599 kb on - strand, within ABIE41_RS01390at 275.599 kb on - strand, within ABIE41_RS01390at 275.599 kb on - strand, within ABIE41_RS01390at 275.678 kb on + strandat 275.678 kb on + strandat 275.678 kb on + strandat 275.679 kb on - strandat 275.684 kb on + strandat 275.685 kb on - strandat 275.685 kb on - strandat 275.787 kb on - strand, within ABIE41_RS01395at 275.787 kb on - strand, within ABIE41_RS01395at 275.787 kb on - strand, within ABIE41_RS01395at 275.787 kb on - strand, within ABIE41_RS01395at 275.787 kb on - strand, within ABIE41_RS01395at 275.787 kb on - strand, within ABIE41_RS01395

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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273,063 + -2.4
273,297 + ABIE41_RS01380 0.36 +0.7
273,297 + ABIE41_RS01380 0.36 +0.0
273,297 + ABIE41_RS01380 0.36 -1.5
273,298 - ABIE41_RS01380 0.36 -2.2
273,298 - ABIE41_RS01380 0.36 +0.3
273,456 + ABIE41_RS01380 0.59 +0.8
273,510 + ABIE41_RS01380 0.66 -0.2
273,510 + ABIE41_RS01380 0.66 +1.5
273,511 - ABIE41_RS01380 0.67 +1.5
273,531 + ABIE41_RS01380 0.69 +1.9
273,531 + ABIE41_RS01380 0.69 -3.1
273,532 - ABIE41_RS01380 0.70 +2.1
273,532 - ABIE41_RS01380 0.70 +0.8
273,567 + ABIE41_RS01380 0.75 +1.1
273,568 - ABIE41_RS01380 0.75 +0.2
273,938 - +0.5
273,947 + ABIE41_RS01385 0.10 -1.0
273,947 + ABIE41_RS01385 0.10 +0.2
273,947 + ABIE41_RS01385 0.10 -0.7
273,947 + ABIE41_RS01385 0.10 -0.8
273,947 + ABIE41_RS01385 0.10 -0.1
273,947 + ABIE41_RS01385 0.10 -0.1
273,948 - ABIE41_RS01385 0.10 -0.4
274,098 - ABIE41_RS01385 0.24 +0.0
274,221 - ABIE41_RS01385 0.35 -0.6
274,221 - ABIE41_RS01385 0.35 -0.4
274,221 - ABIE41_RS01385 0.35 +0.4
274,337 + ABIE41_RS01385 0.46 +0.6
274,338 - ABIE41_RS01385 0.46 -1.2
274,367 + ABIE41_RS01385 0.49 -0.7
274,367 + ABIE41_RS01385 0.49 -0.7
274,367 + ABIE41_RS01385 0.49 +0.1
274,368 - ABIE41_RS01385 0.49 -3.1
274,368 - ABIE41_RS01385 0.49 +0.2
274,368 - ABIE41_RS01385 0.49 -0.0
274,368 - ABIE41_RS01385 0.49 -0.3
274,368 - ABIE41_RS01385 0.49 +0.3
274,371 + ABIE41_RS01385 0.49 -0.8
274,371 + ABIE41_RS01385 0.49 +1.1
274,371 + ABIE41_RS01385 0.49 +3.6
274,371 + ABIE41_RS01385 0.49 +1.9
274,371 + ABIE41_RS01385 0.49 -0.5
274,371 + ABIE41_RS01385 0.49 +0.2
274,371 + ABIE41_RS01385 0.49 -0.1
274,372 - ABIE41_RS01385 0.49 -0.8
274,372 - ABIE41_RS01385 0.49 -0.1
274,373 + ABIE41_RS01385 0.49 -1.4
274,374 - ABIE41_RS01385 0.49 -1.8
274,490 + ABIE41_RS01385 0.60 +1.0
274,580 + ABIE41_RS01385 0.68 -0.8
274,580 + ABIE41_RS01385 0.68 +0.0
274,580 + ABIE41_RS01385 0.68 +0.2
274,580 + ABIE41_RS01385 0.68 +0.2
274,580 + ABIE41_RS01385 0.68 -0.1
274,581 - ABIE41_RS01385 0.68 +0.2
274,581 - ABIE41_RS01385 0.68 -2.7
274,581 - ABIE41_RS01385 0.68 +1.0
274,581 - ABIE41_RS01385 0.68 +0.8
274,665 + ABIE41_RS01385 0.76 +0.2
274,665 + ABIE41_RS01385 0.76 +0.1
274,666 - ABIE41_RS01385 0.76 +0.4
274,941 + +1.0
274,941 + -0.2
274,942 - +0.3
275,484 + ABIE41_RS01390 0.64 +1.5
275,484 + ABIE41_RS01390 0.64 -0.3
275,485 - ABIE41_RS01390 0.64 -0.3
275,485 - ABIE41_RS01390 0.64 -0.1
275,485 - ABIE41_RS01390 0.64 -0.5
275,598 + ABIE41_RS01390 0.86 +1.0
275,599 - ABIE41_RS01390 0.86 +1.1
275,599 - ABIE41_RS01390 0.86 -1.5
275,599 - ABIE41_RS01390 0.86 -0.3
275,678 + -0.1
275,678 + +0.2
275,678 + +0.7
275,679 - +0.4
275,684 + +0.5
275,685 - +1.6
275,685 - +0.1
275,787 - ABIE41_RS01395 0.12 +0.4
275,787 - ABIE41_RS01395 0.12 -0.1
275,787 - ABIE41_RS01395 0.12 -0.4
275,787 - ABIE41_RS01395 0.12 -2.0
275,787 - ABIE41_RS01395 0.12 -1.1
275,787 - ABIE41_RS01395 0.12 -0.5

Or see this region's nucleotide sequence