Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21530 and ABIE40_RS21535 are separated by 165 nucleotides ABIE40_RS21535 and ABIE40_RS21540 are separated by 1 nucleotides
ABIE40_RS21530: ABIE40_RS21530 - helix-turn-helix domain-containing protein, at 424,764 to 426,566
_RS21530
ABIE40_RS21535: ABIE40_RS21535 - flavin reductase, at 426,732 to 427,724
_RS21535
ABIE40_RS21540: ABIE40_RS21540 - aldehyde dehydrogenase, at 427,726 to 429,240
_RS21540
Position (kb) 426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 425.788 kb on + strand, within ABIE40_RS21530 at 425.788 kb on + strand, within ABIE40_RS21530 at 425.789 kb on - strand, within ABIE40_RS21530 at 425.789 kb on - strand, within ABIE40_RS21530 at 425.948 kb on + strand, within ABIE40_RS21530 at 425.948 kb on + strand, within ABIE40_RS21530 at 425.948 kb on + strand, within ABIE40_RS21530 at 425.948 kb on + strand, within ABIE40_RS21530 at 425.949 kb on - strand, within ABIE40_RS21530 at 425.949 kb on - strand, within ABIE40_RS21530 at 425.949 kb on - strand, within ABIE40_RS21530 at 425.949 kb on - strand, within ABIE40_RS21530 at 426.100 kb on - strand, within ABIE40_RS21530 at 426.352 kb on - strand, within ABIE40_RS21530 at 426.352 kb on - strand, within ABIE40_RS21530 at 426.372 kb on + strand, within ABIE40_RS21530 at 426.372 kb on + strand, within ABIE40_RS21530 at 426.372 kb on + strand, within ABIE40_RS21530 at 426.373 kb on - strand, within ABIE40_RS21530 at 426.373 kb on - strand, within ABIE40_RS21530 at 426.373 kb on - strand, within ABIE40_RS21530 at 426.410 kb on + strand at 426.411 kb on - strand at 426.565 kb on - strand at 426.626 kb on + strand at 426.626 kb on + strand at 426.626 kb on + strand at 426.627 kb on - strand at 426.627 kb on - strand at 426.627 kb on - strand at 426.627 kb on - strand at 426.695 kb on + strand at 426.696 kb on - strand at 426.696 kb on - strand at 426.937 kb on - strand, within ABIE40_RS21535 at 426.937 kb on - strand, within ABIE40_RS21535 at 426.994 kb on + strand, within ABIE40_RS21535 at 426.994 kb on + strand, within ABIE40_RS21535 at 426.994 kb on + strand, within ABIE40_RS21535 at 426.994 kb on + strand, within ABIE40_RS21535 at 426.995 kb on - strand, within ABIE40_RS21535 at 426.995 kb on - strand, within ABIE40_RS21535 at 426.995 kb on - strand, within ABIE40_RS21535 at 426.995 kb on - strand, within ABIE40_RS21535 at 426.995 kb on - strand, within ABIE40_RS21535 at 427.001 kb on - strand, within ABIE40_RS21535 at 427.058 kb on + strand, within ABIE40_RS21535 at 427.058 kb on + strand, within ABIE40_RS21535 at 427.058 kb on + strand, within ABIE40_RS21535 at 427.058 kb on + strand, within ABIE40_RS21535 at 427.058 kb on + strand, within ABIE40_RS21535 at 427.059 kb on - strand, within ABIE40_RS21535 at 427.059 kb on - strand, within ABIE40_RS21535 at 427.116 kb on + strand, within ABIE40_RS21535 at 427.116 kb on + strand, within ABIE40_RS21535 at 427.116 kb on + strand, within ABIE40_RS21535 at 427.116 kb on + strand, within ABIE40_RS21535 at 427.116 kb on + strand, within ABIE40_RS21535 at 427.116 kb on + strand, within ABIE40_RS21535 at 427.116 kb on + strand, within ABIE40_RS21535 at 427.116 kb on + strand, within ABIE40_RS21535 at 427.117 kb on - strand, within ABIE40_RS21535 at 427.117 kb on - strand, within ABIE40_RS21535 at 427.117 kb on - strand, within ABIE40_RS21535 at 427.117 kb on - strand, within ABIE40_RS21535 at 427.117 kb on - strand, within ABIE40_RS21535 at 427.117 kb on - strand, within ABIE40_RS21535 at 427.117 kb on - strand, within ABIE40_RS21535 at 427.117 kb on - strand, within ABIE40_RS21535 at 427.117 kb on - strand, within ABIE40_RS21535 at 427.117 kb on - strand, within ABIE40_RS21535 at 427.117 kb on - strand, within ABIE40_RS21535 at 427.279 kb on - strand, within ABIE40_RS21535 at 427.428 kb on + strand, within ABIE40_RS21535 at 427.428 kb on + strand, within ABIE40_RS21535 at 427.428 kb on + strand, within ABIE40_RS21535 at 427.429 kb on - strand, within ABIE40_RS21535 at 427.429 kb on - strand, within ABIE40_RS21535 at 427.429 kb on - strand, within ABIE40_RS21535 at 427.445 kb on - strand, within ABIE40_RS21535 at 427.473 kb on + strand, within ABIE40_RS21535 at 427.473 kb on + strand, within ABIE40_RS21535 at 427.473 kb on + strand, within ABIE40_RS21535 at 427.555 kb on - strand, within ABIE40_RS21535 at 427.599 kb on + strand, within ABIE40_RS21535 at 427.599 kb on + strand, within ABIE40_RS21535 at 427.600 kb on - strand, within ABIE40_RS21535 at 427.635 kb on + strand at 427.636 kb on - strand at 427.636 kb on - strand at 427.636 kb on - strand at 427.636 kb on - strand at 427.636 kb on - strand at 427.739 kb on + strand at 427.739 kb on + strand at 427.740 kb on - strand at 427.740 kb on - strand at 427.740 kb on - strand at 427.810 kb on + strand at 427.811 kb on - strand at 427.811 kb on - strand at 427.822 kb on + strand at 427.849 kb on + strand at 427.849 kb on + strand at 427.849 kb on + strand at 427.849 kb on + strand at 427.850 kb on - strand at 428.079 kb on + strand, within ABIE40_RS21540 at 428.080 kb on - strand, within ABIE40_RS21540 at 428.080 kb on - strand, within ABIE40_RS21540 at 428.080 kb on - strand, within ABIE40_RS21540 at 428.080 kb on - strand, within ABIE40_RS21540 at 428.083 kb on + strand, within ABIE40_RS21540 at 428.083 kb on + strand, within ABIE40_RS21540 at 428.083 kb on + strand, within ABIE40_RS21540 at 428.083 kb on + strand, within ABIE40_RS21540 at 428.083 kb on + strand, within ABIE40_RS21540 at 428.083 kb on + strand, within ABIE40_RS21540 at 428.083 kb on + strand, within ABIE40_RS21540 at 428.083 kb on + strand, within ABIE40_RS21540 at 428.083 kb on + strand, within ABIE40_RS21540 at 428.084 kb on - strand, within ABIE40_RS21540 at 428.084 kb on - strand, within ABIE40_RS21540 at 428.084 kb on - strand, within ABIE40_RS21540 at 428.084 kb on - strand, within ABIE40_RS21540 at 428.084 kb on - strand, within ABIE40_RS21540 at 428.084 kb on - strand, within ABIE40_RS21540 at 428.084 kb on - strand, within ABIE40_RS21540 at 428.089 kb on + strand, within ABIE40_RS21540 at 428.090 kb on - strand, within ABIE40_RS21540 at 428.090 kb on - strand, within ABIE40_RS21540 at 428.090 kb on - strand, within ABIE40_RS21540 at 428.191 kb on - strand, within ABIE40_RS21540 at 428.422 kb on + strand, within ABIE40_RS21540 at 428.422 kb on + strand, within ABIE40_RS21540 at 428.422 kb on + strand, within ABIE40_RS21540 at 428.422 kb on + strand, within ABIE40_RS21540 at 428.422 kb on + strand, within ABIE40_RS21540 at 428.422 kb on + strand, within ABIE40_RS21540 at 428.422 kb on + strand, within ABIE40_RS21540 at 428.422 kb on + strand, within ABIE40_RS21540 at 428.422 kb on + strand, within ABIE40_RS21540 at 428.423 kb on - strand, within ABIE40_RS21540 at 428.423 kb on - strand, within ABIE40_RS21540 at 428.423 kb on - strand, within ABIE40_RS21540 at 428.423 kb on - strand, within ABIE40_RS21540 at 428.641 kb on + strand, within ABIE40_RS21540 at 428.642 kb on - strand, within ABIE40_RS21540 at 428.642 kb on - strand, within ABIE40_RS21540 at 428.713 kb on - strand, within ABIE40_RS21540 at 428.713 kb on - strand, within ABIE40_RS21540
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 425,788 + ABIE40_RS21530 0.57 +0.1 425,788 + ABIE40_RS21530 0.57 +0.2 425,789 - ABIE40_RS21530 0.57 -0.6 425,789 - ABIE40_RS21530 0.57 +1.5 425,948 + ABIE40_RS21530 0.66 +1.3 425,948 + ABIE40_RS21530 0.66 -0.5 425,948 + ABIE40_RS21530 0.66 -0.3 425,948 + ABIE40_RS21530 0.66 -0.2 425,949 - ABIE40_RS21530 0.66 +0.4 425,949 - ABIE40_RS21530 0.66 +1.1 425,949 - ABIE40_RS21530 0.66 +0.2 425,949 - ABIE40_RS21530 0.66 +0.2 426,100 - ABIE40_RS21530 0.74 -2.6 426,352 - ABIE40_RS21530 0.88 +0.5 426,352 - ABIE40_RS21530 0.88 -1.9 426,372 + ABIE40_RS21530 0.89 +0.9 426,372 + ABIE40_RS21530 0.89 +0.0 426,372 + ABIE40_RS21530 0.89 +0.4 426,373 - ABIE40_RS21530 0.89 -0.1 426,373 - ABIE40_RS21530 0.89 -0.7 426,373 - ABIE40_RS21530 0.89 +0.1 426,410 + +0.0 426,411 - -0.0 426,565 - +0.0 426,626 + +0.6 426,626 + +1.3 426,626 + +0.9 426,627 - +0.3 426,627 - +0.3 426,627 - -0.0 426,627 - -2.2 426,695 + -0.2 426,696 - -1.6 426,696 - +1.6 426,937 - ABIE40_RS21535 0.21 -1.1 426,937 - ABIE40_RS21535 0.21 -0.2 426,994 + ABIE40_RS21535 0.26 -0.7 426,994 + ABIE40_RS21535 0.26 +0.6 426,994 + ABIE40_RS21535 0.26 -1.7 426,994 + ABIE40_RS21535 0.26 +0.7 426,995 - ABIE40_RS21535 0.26 -0.7 426,995 - ABIE40_RS21535 0.26 +0.3 426,995 - ABIE40_RS21535 0.26 -1.6 426,995 - ABIE40_RS21535 0.26 -2.2 426,995 - ABIE40_RS21535 0.26 -0.4 427,001 - ABIE40_RS21535 0.27 +1.0 427,058 + ABIE40_RS21535 0.33 +0.6 427,058 + ABIE40_RS21535 0.33 +0.1 427,058 + ABIE40_RS21535 0.33 -1.4 427,058 + ABIE40_RS21535 0.33 +0.5 427,058 + ABIE40_RS21535 0.33 +0.1 427,059 - ABIE40_RS21535 0.33 +1.3 427,059 - ABIE40_RS21535 0.33 -0.4 427,116 + ABIE40_RS21535 0.39 -0.7 427,116 + ABIE40_RS21535 0.39 -0.8 427,116 + ABIE40_RS21535 0.39 -1.0 427,116 + ABIE40_RS21535 0.39 +0.4 427,116 + ABIE40_RS21535 0.39 +0.4 427,116 + ABIE40_RS21535 0.39 +0.7 427,116 + ABIE40_RS21535 0.39 -0.7 427,116 + ABIE40_RS21535 0.39 -2.0 427,117 - ABIE40_RS21535 0.39 +0.2 427,117 - ABIE40_RS21535 0.39 +0.1 427,117 - ABIE40_RS21535 0.39 +0.4 427,117 - ABIE40_RS21535 0.39 -1.2 427,117 - ABIE40_RS21535 0.39 +0.9 427,117 - ABIE40_RS21535 0.39 -1.3 427,117 - ABIE40_RS21535 0.39 +2.1 427,117 - ABIE40_RS21535 0.39 -0.3 427,117 - ABIE40_RS21535 0.39 -2.5 427,117 - ABIE40_RS21535 0.39 +0.2 427,117 - ABIE40_RS21535 0.39 -0.8 427,279 - ABIE40_RS21535 0.55 -1.7 427,428 + ABIE40_RS21535 0.70 -0.4 427,428 + ABIE40_RS21535 0.70 -1.0 427,428 + ABIE40_RS21535 0.70 +0.8 427,429 - ABIE40_RS21535 0.70 -1.8 427,429 - ABIE40_RS21535 0.70 -1.0 427,429 - ABIE40_RS21535 0.70 -0.0 427,445 - ABIE40_RS21535 0.72 +0.3 427,473 + ABIE40_RS21535 0.75 -0.8 427,473 + ABIE40_RS21535 0.75 +0.2 427,473 + ABIE40_RS21535 0.75 -0.3 427,555 - ABIE40_RS21535 0.83 +0.1 427,599 + ABIE40_RS21535 0.87 -0.8 427,599 + ABIE40_RS21535 0.87 +0.4 427,600 - ABIE40_RS21535 0.87 -1.1 427,635 + +1.7 427,636 - -0.7 427,636 - -0.3 427,636 - +0.2 427,636 - -0.6 427,636 - +0.9 427,739 + +0.7 427,739 + -0.4 427,740 - -1.0 427,740 - -2.4 427,740 - -0.3 427,810 + -0.1 427,811 - -1.5 427,811 - -0.5 427,822 + -0.9 427,849 + -0.8 427,849 + +0.5 427,849 + -0.0 427,849 + +0.4 427,850 - -0.2 428,079 + ABIE40_RS21540 0.23 -0.5 428,080 - ABIE40_RS21540 0.23 -0.5 428,080 - ABIE40_RS21540 0.23 +0.8 428,080 - ABIE40_RS21540 0.23 -0.5 428,080 - ABIE40_RS21540 0.23 -0.8 428,083 + ABIE40_RS21540 0.24 -0.5 428,083 + ABIE40_RS21540 0.24 +0.2 428,083 + ABIE40_RS21540 0.24 -0.3 428,083 + ABIE40_RS21540 0.24 -0.4 428,083 + ABIE40_RS21540 0.24 -1.9 428,083 + ABIE40_RS21540 0.24 +0.6 428,083 + ABIE40_RS21540 0.24 +0.6 428,083 + ABIE40_RS21540 0.24 -0.9 428,083 + ABIE40_RS21540 0.24 -1.6 428,084 - ABIE40_RS21540 0.24 +1.2 428,084 - ABIE40_RS21540 0.24 +0.5 428,084 - ABIE40_RS21540 0.24 -3.0 428,084 - ABIE40_RS21540 0.24 -0.9 428,084 - ABIE40_RS21540 0.24 +0.6 428,084 - ABIE40_RS21540 0.24 +1.1 428,084 - ABIE40_RS21540 0.24 -0.1 428,089 + ABIE40_RS21540 0.24 +0.2 428,090 - ABIE40_RS21540 0.24 +0.0 428,090 - ABIE40_RS21540 0.24 -0.2 428,090 - ABIE40_RS21540 0.24 +0.2 428,191 - ABIE40_RS21540 0.31 +0.4 428,422 + ABIE40_RS21540 0.46 +0.8 428,422 + ABIE40_RS21540 0.46 -0.1 428,422 + ABIE40_RS21540 0.46 -2.3 428,422 + ABIE40_RS21540 0.46 +0.5 428,422 + ABIE40_RS21540 0.46 -0.4 428,422 + ABIE40_RS21540 0.46 -1.2 428,422 + ABIE40_RS21540 0.46 -0.2 428,422 + ABIE40_RS21540 0.46 -0.0 428,422 + ABIE40_RS21540 0.46 -0.4 428,423 - ABIE40_RS21540 0.46 -0.5 428,423 - ABIE40_RS21540 0.46 -0.2 428,423 - ABIE40_RS21540 0.46 -0.4 428,423 - ABIE40_RS21540 0.46 -0.4 428,641 + ABIE40_RS21540 0.60 +0.6 428,642 - ABIE40_RS21540 0.60 -1.4 428,642 - ABIE40_RS21540 0.60 -0.1 428,713 - ABIE40_RS21540 0.65 -0.3 428,713 - ABIE40_RS21540 0.65 -0.0
Or see this region's nucleotide sequence