Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21980 and ABID97_RS21985 overlap by 4 nucleotides ABID97_RS21985 and ABID97_RS21990 are separated by 22 nucleotides ABID97_RS21990 and ABID97_RS21995 are separated by 62 nucleotides
ABID97_RS21980: ABID97_RS21980 - ABC transporter permease, at 4,547,035 to 4,548,117
_RS21980
ABID97_RS21985: ABID97_RS21985 - ABC transporter substrate-binding protein, at 4,548,114 to 4,549,115
_RS21985
ABID97_RS21990: ABID97_RS21990 - class II aldolase/adducin family protein, at 4,549,138 to 4,549,962
_RS21990
ABID97_RS21995: ABID97_RS21995 - LLM class flavin-dependent oxidoreductase, at 4,550,025 to 4,551,134
_RS21995
Position (kb) 4548
4549
4550 Strain fitness (log2 ratio) -1
0
1 at 4547.141 kb on + strand at 4547.142 kb on - strand at 4547.142 kb on - strand at 4547.184 kb on - strand, within ABID97_RS21980 at 4547.351 kb on + strand, within ABID97_RS21980 at 4547.444 kb on + strand, within ABID97_RS21980 at 4547.663 kb on + strand, within ABID97_RS21980 at 4548.205 kb on + strand at 4548.206 kb on - strand at 4548.457 kb on + strand, within ABID97_RS21985 at 4548.520 kb on + strand, within ABID97_RS21985 at 4548.898 kb on + strand, within ABID97_RS21985 at 4549.178 kb on + strand at 4549.178 kb on + strand at 4549.322 kb on + strand, within ABID97_RS21990 at 4550.027 kb on - strand at 4550.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 4,547,141 + -0.2 4,547,142 - +1.0 4,547,142 - -0.2 4,547,184 - ABID97_RS21980 0.14 +0.3 4,547,351 + ABID97_RS21980 0.29 -1.0 4,547,444 + ABID97_RS21980 0.38 +0.6 4,547,663 + ABID97_RS21980 0.58 -0.0 4,548,205 + -0.1 4,548,206 - +0.3 4,548,457 + ABID97_RS21985 0.34 +0.2 4,548,520 + ABID97_RS21985 0.41 -0.7 4,548,898 + ABID97_RS21985 0.78 -1.4 4,549,178 + +0.1 4,549,178 + +0.0 4,549,322 + ABID97_RS21990 0.22 +0.4 4,550,027 - -1.5 4,550,027 - +0.1
Or see this region's nucleotide sequence