Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16230

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16225 and ABID97_RS16230 are separated by 65 nucleotidesABID97_RS16230 and ABID97_RS16235 overlap by 1 nucleotides ABID97_RS16225: ABID97_RS16225 - cytochrome-c oxidase, cbb3-type subunit I, at 3,357,877 to 3,359,316 _RS16225 ABID97_RS16230: ABID97_RS16230 - cbb3-type cytochrome oxidase assembly protein CcoS, at 3,359,382 to 3,359,519 _RS16230 ABID97_RS16235: ABID97_RS16235 - cation-translocating P-type ATPase, at 3,359,519 to 3,361,840 _RS16235 Position (kb) 3359 3360Strain fitness (log2 ratio) -1 0 1at 3358.529 kb on + strand, within ABID97_RS16225at 3358.559 kb on + strand, within ABID97_RS16225at 3358.560 kb on - strand, within ABID97_RS16225at 3358.638 kb on - strand, within ABID97_RS16225at 3358.638 kb on - strand, within ABID97_RS16225at 3358.641 kb on - strand, within ABID97_RS16225at 3358.641 kb on - strand, within ABID97_RS16225at 3358.643 kb on + strand, within ABID97_RS16225at 3358.644 kb on - strand, within ABID97_RS16225at 3358.644 kb on - strand, within ABID97_RS16225at 3358.838 kb on + strand, within ABID97_RS16225at 3358.838 kb on + strand, within ABID97_RS16225at 3358.839 kb on - strand, within ABID97_RS16225at 3358.849 kb on + strand, within ABID97_RS16225at 3358.889 kb on + strand, within ABID97_RS16225at 3358.943 kb on + strand, within ABID97_RS16225at 3359.154 kb on - strand, within ABID97_RS16225at 3359.286 kb on - strandat 3359.655 kb on + strandat 3359.655 kb on + strandat 3360.072 kb on - strand, within ABID97_RS16235

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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3,358,529 + ABID97_RS16225 0.45 -0.1
3,358,559 + ABID97_RS16225 0.47 +0.2
3,358,560 - ABID97_RS16225 0.47 -0.4
3,358,638 - ABID97_RS16225 0.53 -0.6
3,358,638 - ABID97_RS16225 0.53 -1.1
3,358,641 - ABID97_RS16225 0.53 -1.5
3,358,641 - ABID97_RS16225 0.53 +0.1
3,358,643 + ABID97_RS16225 0.53 +0.1
3,358,644 - ABID97_RS16225 0.53 -0.0
3,358,644 - ABID97_RS16225 0.53 -1.3
3,358,838 + ABID97_RS16225 0.67 -0.1
3,358,838 + ABID97_RS16225 0.67 -0.4
3,358,839 - ABID97_RS16225 0.67 +0.2
3,358,849 + ABID97_RS16225 0.68 +0.3
3,358,889 + ABID97_RS16225 0.70 +0.2
3,358,943 + ABID97_RS16225 0.74 +0.2
3,359,154 - ABID97_RS16225 0.89 -0.6
3,359,286 - -1.5
3,359,655 + -0.2
3,359,655 + -0.5
3,360,072 - ABID97_RS16235 0.24 -0.1

Or see this region's nucleotide sequence