Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13540

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13535 and ABID97_RS13540 are separated by 38 nucleotidesABID97_RS13540 and ABID97_RS13545 are separated by 52 nucleotides ABID97_RS13535: ABID97_RS13535 - aldehyde dehydrogenase, at 2,820,027 to 2,821,505 _RS13535 ABID97_RS13540: ABID97_RS13540 - FAD-dependent oxidoreductase, at 2,821,544 to 2,823,007 _RS13540 ABID97_RS13545: ABID97_RS13545 - ABC transporter substrate-binding protein, at 2,823,060 to 2,824,259 _RS13545 Position (kb) 2821 2822 2823 2824Strain fitness (log2 ratio) -1 0 1at 2821.700 kb on + strand, within ABID97_RS13540at 2821.701 kb on - strand, within ABID97_RS13540at 2822.255 kb on + strand, within ABID97_RS13540at 2822.259 kb on - strand, within ABID97_RS13540at 2822.320 kb on - strand, within ABID97_RS13540at 2822.885 kb on + strandat 2822.912 kb on + strandat 2822.913 kb on - strandat 2823.502 kb on - strand, within ABID97_RS13545at 2823.565 kb on - strand, within ABID97_RS13545at 2823.661 kb on - strand, within ABID97_RS13545at 2823.942 kb on + strand, within ABID97_RS13545

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,821,700 + ABID97_RS13540 0.11 -0.3
2,821,701 - ABID97_RS13540 0.11 -0.5
2,822,255 + ABID97_RS13540 0.49 +0.3
2,822,259 - ABID97_RS13540 0.49 -0.1
2,822,320 - ABID97_RS13540 0.53 +0.0
2,822,885 + +1.3
2,822,912 + -1.0
2,822,913 - +0.4
2,823,502 - ABID97_RS13545 0.37 -0.4
2,823,565 - ABID97_RS13545 0.42 -1.2
2,823,661 - ABID97_RS13545 0.50 -0.3
2,823,942 + ABID97_RS13545 0.73 -0.5

Or see this region's nucleotide sequence