Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13080

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13075 and ABID97_RS13080 are separated by 246 nucleotidesABID97_RS13080 and ABID97_RS13085 are separated by 18 nucleotides ABID97_RS13075: ABID97_RS13075 - glycoside hydrolase family 5 protein, at 2,720,978 to 2,722,126 _RS13075 ABID97_RS13080: ABID97_RS13080 - serine hydrolase domain-containing protein, at 2,722,373 to 2,724,289 _RS13080 ABID97_RS13085: ABID97_RS13085 - mandelate racemase/muconate lactonizing enzyme family protein, at 2,724,308 to 2,725,396 _RS13085 Position (kb) 2722 2723 2724 2725Strain fitness (log2 ratio) -1 0 1 2 3at 2721.659 kb on + strand, within ABID97_RS13075at 2721.660 kb on - strand, within ABID97_RS13075at 2721.801 kb on + strand, within ABID97_RS13075at 2721.834 kb on + strand, within ABID97_RS13075at 2721.835 kb on - strand, within ABID97_RS13075at 2721.923 kb on - strand, within ABID97_RS13075at 2722.243 kb on + strandat 2722.905 kb on - strand, within ABID97_RS13080at 2723.009 kb on + strand, within ABID97_RS13080at 2723.138 kb on + strand, within ABID97_RS13080at 2723.286 kb on - strand, within ABID97_RS13080at 2723.286 kb on - strand, within ABID97_RS13080at 2723.687 kb on + strand, within ABID97_RS13080at 2723.688 kb on - strand, within ABID97_RS13080at 2723.688 kb on - strand, within ABID97_RS13080at 2723.837 kb on + strand, within ABID97_RS13080at 2723.850 kb on - strand, within ABID97_RS13080at 2723.882 kb on + strand, within ABID97_RS13080at 2723.882 kb on + strand, within ABID97_RS13080at 2723.883 kb on - strand, within ABID97_RS13080at 2723.919 kb on - strand, within ABID97_RS13080at 2724.095 kb on + strand, within ABID97_RS13080at 2724.095 kb on + strand, within ABID97_RS13080at 2724.096 kb on + strand, within ABID97_RS13080at 2724.096 kb on - strand, within ABID97_RS13080at 2724.097 kb on + strand, within ABID97_RS13080at 2724.097 kb on + strand, within ABID97_RS13080at 2724.453 kb on - strand, within ABID97_RS13085at 2724.459 kb on - strand, within ABID97_RS13085at 2724.716 kb on + strand, within ABID97_RS13085at 2724.716 kb on + strand, within ABID97_RS13085at 2725.289 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,721,659 + ABID97_RS13075 0.59 +0.1
2,721,660 - ABID97_RS13075 0.59 -0.4
2,721,801 + ABID97_RS13075 0.72 +0.1
2,721,834 + ABID97_RS13075 0.74 +0.2
2,721,835 - ABID97_RS13075 0.75 -0.2
2,721,923 - ABID97_RS13075 0.82 -0.8
2,722,243 + +0.7
2,722,905 - ABID97_RS13080 0.28 -1.7
2,723,009 + ABID97_RS13080 0.33 -0.2
2,723,138 + ABID97_RS13080 0.40 -1.3
2,723,286 - ABID97_RS13080 0.48 -0.6
2,723,286 - ABID97_RS13080 0.48 +0.6
2,723,687 + ABID97_RS13080 0.69 +0.5
2,723,688 - ABID97_RS13080 0.69 -1.3
2,723,688 - ABID97_RS13080 0.69 +0.4
2,723,837 + ABID97_RS13080 0.76 +0.4
2,723,850 - ABID97_RS13080 0.77 -0.8
2,723,882 + ABID97_RS13080 0.79 -1.3
2,723,882 + ABID97_RS13080 0.79 -0.8
2,723,883 - ABID97_RS13080 0.79 -0.3
2,723,919 - ABID97_RS13080 0.81 +3.5
2,724,095 + ABID97_RS13080 0.90 -0.3
2,724,095 + ABID97_RS13080 0.90 +0.2
2,724,096 + ABID97_RS13080 0.90 +0.9
2,724,096 - ABID97_RS13080 0.90 -0.3
2,724,097 + ABID97_RS13080 0.90 -0.8
2,724,097 + ABID97_RS13080 0.90 -0.2
2,724,453 - ABID97_RS13085 0.13 -1.3
2,724,459 - ABID97_RS13085 0.14 -0.3
2,724,716 + ABID97_RS13085 0.37 -0.1
2,724,716 + ABID97_RS13085 0.37 -0.1
2,725,289 + +1.5

Or see this region's nucleotide sequence