Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11970

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11965 and ABID97_RS11970 are separated by 80 nucleotidesABID97_RS11970 and ABID97_RS11975 are separated by 9 nucleotides ABID97_RS11965: ABID97_RS11965 - PAS domain S-box protein, at 2,468,363 to 2,472,973 _RS11965 ABID97_RS11970: ABID97_RS11970 - chemotaxis protein CheB, at 2,473,054 to 2,474,067 _RS11970 ABID97_RS11975: ABID97_RS11975 - manganese catalase family protein, at 2,474,077 to 2,474,997 _RS11975 Position (kb) 2473 2474 2475Strain fitness (log2 ratio) -1 0 1at 2473.028 kb on - strandat 2473.114 kb on + strandat 2473.114 kb on + strandat 2473.409 kb on - strand, within ABID97_RS11970at 2474.357 kb on + strand, within ABID97_RS11975at 2474.358 kb on - strand, within ABID97_RS11975at 2474.358 kb on - strand, within ABID97_RS11975at 2474.421 kb on - strand, within ABID97_RS11975at 2474.421 kb on - strand, within ABID97_RS11975at 2474.705 kb on + strand, within ABID97_RS11975at 2474.705 kb on + strand, within ABID97_RS11975at 2474.970 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,473,028 - -0.3
2,473,114 + +0.0
2,473,114 + +1.1
2,473,409 - ABID97_RS11970 0.35 +1.3
2,474,357 + ABID97_RS11975 0.30 +0.8
2,474,358 - ABID97_RS11975 0.31 -0.2
2,474,358 - ABID97_RS11975 0.31 +0.1
2,474,421 - ABID97_RS11975 0.37 -0.5
2,474,421 - ABID97_RS11975 0.37 -0.1
2,474,705 + ABID97_RS11975 0.68 -0.8
2,474,705 + ABID97_RS11975 0.68 +1.0
2,474,970 - +0.6

Or see this region's nucleotide sequence