Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10530 and ABID97_RS10535 are separated by 91 nucleotides ABID97_RS10535 and ABID97_RS10540 are separated by 337 nucleotides
ABID97_RS10530: ABID97_RS10530 - multidrug effflux MFS transporter, at 2,188,352 to 2,189,587
_RS10530
ABID97_RS10535: ABID97_RS10535 - RNA polymerase sigma factor RpoD, at 2,189,679 to 2,192,033
_RS10535
ABID97_RS10540: ABID97_RS10540 - DNA primase, at 2,192,371 to 2,194,347
_RS10540
Position (kb)
2189
2190
2191
2192
2193 Strain fitness (log2 ratio)
-1
0
1
2 at 2189.028 kb on + strand, within ABID97_RS10530 at 2189.028 kb on + strand, within ABID97_RS10530 at 2189.028 kb on + strand, within ABID97_RS10530 at 2189.028 kb on + strand, within ABID97_RS10530 at 2189.028 kb on + strand, within ABID97_RS10530 at 2189.029 kb on - strand, within ABID97_RS10530 at 2189.029 kb on - strand, within ABID97_RS10530 at 2189.029 kb on - strand, within ABID97_RS10530 at 2189.149 kb on - strand, within ABID97_RS10530 at 2189.149 kb on - strand, within ABID97_RS10530 at 2189.487 kb on + strand at 2189.487 kb on + strand at 2189.487 kb on + strand at 2189.487 kb on + strand at 2189.487 kb on + strand at 2189.487 kb on + strand at 2189.488 kb on - strand at 2189.488 kb on - strand at 2189.488 kb on - strand at 2189.488 kb on - strand at 2189.488 kb on - strand at 2189.609 kb on - strand at 2189.688 kb on - strand at 2189.694 kb on - strand at 2189.694 kb on - strand at 2191.935 kb on - strand at 2191.935 kb on - strand at 2191.935 kb on - strand at 2191.946 kb on + strand at 2192.033 kb on + strand at 2192.033 kb on + strand at 2192.034 kb on - strand at 2192.034 kb on - strand at 2192.034 kb on - strand at 2192.044 kb on + strand at 2192.044 kb on + strand at 2192.125 kb on + strand at 2192.125 kb on + strand at 2192.309 kb on + strand at 2192.314 kb on - strand at 2192.336 kb on + strand at 2192.337 kb on - strand at 2192.337 kb on - strand at 2192.341 kb on + strand at 2192.342 kb on - strand at 2192.343 kb on + strand at 2192.348 kb on + strand at 2192.349 kb on - strand at 2192.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 2,189,028 + ABID97_RS10530 0.55 +1.9 2,189,028 + ABID97_RS10530 0.55 +1.8 2,189,028 + ABID97_RS10530 0.55 +0.8 2,189,028 + ABID97_RS10530 0.55 -0.1 2,189,028 + ABID97_RS10530 0.55 +0.1 2,189,029 - ABID97_RS10530 0.55 -0.8 2,189,029 - ABID97_RS10530 0.55 -0.4 2,189,029 - ABID97_RS10530 0.55 +0.5 2,189,149 - ABID97_RS10530 0.64 +0.3 2,189,149 - ABID97_RS10530 0.64 +0.2 2,189,487 + -0.4 2,189,487 + -0.2 2,189,487 + +0.0 2,189,487 + +0.2 2,189,487 + +0.9 2,189,487 + +0.1 2,189,488 - +0.2 2,189,488 - +0.7 2,189,488 - -0.3 2,189,488 - -0.2 2,189,488 - -0.1 2,189,609 - -0.4 2,189,688 - +0.0 2,189,694 - -0.6 2,189,694 - +0.2 2,191,935 - +0.3 2,191,935 - +1.9 2,191,935 - -1.6 2,191,946 + -1.5 2,192,033 + -0.0 2,192,033 + +0.2 2,192,034 - -0.2 2,192,034 - -0.0 2,192,034 - -0.8 2,192,044 + +0.3 2,192,044 + -0.6 2,192,125 + +2.6 2,192,125 + -0.4 2,192,309 + +0.4 2,192,314 - +0.2 2,192,336 + +1.1 2,192,337 - +1.4 2,192,337 - +0.4 2,192,341 + +1.0 2,192,342 - +0.3 2,192,343 + -0.1 2,192,348 + +0.6 2,192,349 - -0.1 2,192,373 - -0.5
Or see this region's nucleotide sequence