Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10535

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10530 and ABID97_RS10535 are separated by 91 nucleotidesABID97_RS10535 and ABID97_RS10540 are separated by 337 nucleotides ABID97_RS10530: ABID97_RS10530 - multidrug effflux MFS transporter, at 2,188,352 to 2,189,587 _RS10530 ABID97_RS10535: ABID97_RS10535 - RNA polymerase sigma factor RpoD, at 2,189,679 to 2,192,033 _RS10535 ABID97_RS10540: ABID97_RS10540 - DNA primase, at 2,192,371 to 2,194,347 _RS10540 Position (kb) 2189 2190 2191 2192 2193Strain fitness (log2 ratio) -1 0 1 2at 2189.028 kb on + strand, within ABID97_RS10530at 2189.028 kb on + strand, within ABID97_RS10530at 2189.028 kb on + strand, within ABID97_RS10530at 2189.028 kb on + strand, within ABID97_RS10530at 2189.028 kb on + strand, within ABID97_RS10530at 2189.029 kb on - strand, within ABID97_RS10530at 2189.029 kb on - strand, within ABID97_RS10530at 2189.029 kb on - strand, within ABID97_RS10530at 2189.149 kb on - strand, within ABID97_RS10530at 2189.149 kb on - strand, within ABID97_RS10530at 2189.487 kb on + strandat 2189.487 kb on + strandat 2189.487 kb on + strandat 2189.487 kb on + strandat 2189.487 kb on + strandat 2189.487 kb on + strandat 2189.488 kb on - strandat 2189.488 kb on - strandat 2189.488 kb on - strandat 2189.488 kb on - strandat 2189.488 kb on - strandat 2189.609 kb on - strandat 2189.688 kb on - strandat 2189.694 kb on - strandat 2189.694 kb on - strandat 2191.935 kb on - strandat 2191.935 kb on - strandat 2191.935 kb on - strandat 2191.946 kb on + strandat 2192.033 kb on + strandat 2192.033 kb on + strandat 2192.034 kb on - strandat 2192.034 kb on - strandat 2192.034 kb on - strandat 2192.044 kb on + strandat 2192.044 kb on + strandat 2192.125 kb on + strandat 2192.125 kb on + strandat 2192.309 kb on + strandat 2192.314 kb on - strandat 2192.336 kb on + strandat 2192.337 kb on - strandat 2192.337 kb on - strandat 2192.341 kb on + strandat 2192.342 kb on - strandat 2192.343 kb on + strandat 2192.348 kb on + strandat 2192.349 kb on - strandat 2192.373 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,189,028 + ABID97_RS10530 0.55 +1.9
2,189,028 + ABID97_RS10530 0.55 +1.8
2,189,028 + ABID97_RS10530 0.55 +0.8
2,189,028 + ABID97_RS10530 0.55 -0.1
2,189,028 + ABID97_RS10530 0.55 +0.1
2,189,029 - ABID97_RS10530 0.55 -0.8
2,189,029 - ABID97_RS10530 0.55 -0.4
2,189,029 - ABID97_RS10530 0.55 +0.5
2,189,149 - ABID97_RS10530 0.64 +0.3
2,189,149 - ABID97_RS10530 0.64 +0.2
2,189,487 + -0.4
2,189,487 + -0.2
2,189,487 + +0.0
2,189,487 + +0.2
2,189,487 + +0.9
2,189,487 + +0.1
2,189,488 - +0.2
2,189,488 - +0.7
2,189,488 - -0.3
2,189,488 - -0.2
2,189,488 - -0.1
2,189,609 - -0.4
2,189,688 - +0.0
2,189,694 - -0.6
2,189,694 - +0.2
2,191,935 - +0.3
2,191,935 - +1.9
2,191,935 - -1.6
2,191,946 + -1.5
2,192,033 + -0.0
2,192,033 + +0.2
2,192,034 - -0.2
2,192,034 - -0.0
2,192,034 - -0.8
2,192,044 + +0.3
2,192,044 + -0.6
2,192,125 + +2.6
2,192,125 + -0.4
2,192,309 + +0.4
2,192,314 - +0.2
2,192,336 + +1.1
2,192,337 - +1.4
2,192,337 - +0.4
2,192,341 + +1.0
2,192,342 - +0.3
2,192,343 + -0.1
2,192,348 + +0.6
2,192,349 - -0.1
2,192,373 - -0.5

Or see this region's nucleotide sequence