Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10120

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10115 and ABID97_RS10120 are separated by 84 nucleotidesABID97_RS10120 and ABID97_RS10125 are separated by 15 nucleotides ABID97_RS10115: ABID97_RS10115 - adenosine deaminase, at 2,101,028 to 2,102,119 _RS10115 ABID97_RS10120: ABID97_RS10120 - LysR family transcriptional regulator, at 2,102,204 to 2,103,163 _RS10120 ABID97_RS10125: ABID97_RS10125 - polyhydroxyalkanoate depolymerase, at 2,103,179 to 2,104,396 _RS10125 Position (kb) 2102 2103 2104Strain fitness (log2 ratio) -1 0 1at 2101.344 kb on + strand, within ABID97_RS10115at 2101.345 kb on - strand, within ABID97_RS10115at 2101.851 kb on + strand, within ABID97_RS10115at 2101.951 kb on + strand, within ABID97_RS10115at 2101.952 kb on - strand, within ABID97_RS10115at 2101.952 kb on - strand, within ABID97_RS10115at 2101.953 kb on + strand, within ABID97_RS10115at 2101.954 kb on - strand, within ABID97_RS10115at 2102.131 kb on + strandat 2102.132 kb on - strandat 2102.168 kb on + strandat 2102.877 kb on - strand, within ABID97_RS10120at 2102.903 kb on + strand, within ABID97_RS10120at 2103.225 kb on + strandat 2103.419 kb on + strand, within ABID97_RS10125at 2103.462 kb on + strand, within ABID97_RS10125at 2103.462 kb on + strand, within ABID97_RS10125at 2103.463 kb on - strand, within ABID97_RS10125at 2103.495 kb on + strand, within ABID97_RS10125at 2103.495 kb on + strand, within ABID97_RS10125at 2103.496 kb on - strand, within ABID97_RS10125at 2103.528 kb on + strand, within ABID97_RS10125at 2103.538 kb on - strand, within ABID97_RS10125at 2104.014 kb on + strand, within ABID97_RS10125at 2104.015 kb on - strand, within ABID97_RS10125

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,101,344 + ABID97_RS10115 0.29 -1.6
2,101,345 - ABID97_RS10115 0.29 -0.7
2,101,851 + ABID97_RS10115 0.75 -0.3
2,101,951 + ABID97_RS10115 0.85 -0.0
2,101,952 - ABID97_RS10115 0.85 -0.5
2,101,952 - ABID97_RS10115 0.85 +0.6
2,101,953 + ABID97_RS10115 0.85 -0.2
2,101,954 - ABID97_RS10115 0.85 -0.1
2,102,131 + -0.3
2,102,132 - -0.5
2,102,168 + -0.7
2,102,877 - ABID97_RS10120 0.70 +0.6
2,102,903 + ABID97_RS10120 0.73 -1.0
2,103,225 + +0.4
2,103,419 + ABID97_RS10125 0.20 +0.7
2,103,462 + ABID97_RS10125 0.23 -0.0
2,103,462 + ABID97_RS10125 0.23 -0.4
2,103,463 - ABID97_RS10125 0.23 +0.0
2,103,495 + ABID97_RS10125 0.26 -1.0
2,103,495 + ABID97_RS10125 0.26 -0.1
2,103,496 - ABID97_RS10125 0.26 -0.1
2,103,528 + ABID97_RS10125 0.29 -0.7
2,103,538 - ABID97_RS10125 0.29 -0.1
2,104,014 + ABID97_RS10125 0.69 +0.2
2,104,015 - ABID97_RS10125 0.69 -0.1

Or see this region's nucleotide sequence