Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01800

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01795 and ABID97_RS01800 are separated by 9 nucleotidesABID97_RS01800 and ABID97_RS01805 overlap by 4 nucleotidesABID97_RS01805 and ABID97_RS01810 overlap by 1 nucleotides ABID97_RS01795: ABID97_RS01795 - tripartite tricarboxylate transporter substrate binding protein, at 352,167 to 353,141 _RS01795 ABID97_RS01800: ABID97_RS01800 - AzlD domain-containing protein, at 353,151 to 353,489 _RS01800 ABID97_RS01805: ABID97_RS01805 - AzlC family ABC transporter permease, at 353,486 to 354,226 _RS01805 ABID97_RS01810: ABID97_RS01810 - methionyl-tRNA formyltransferase, at 354,226 to 355,191 _RS01810 Position (kb) 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1at 352.278 kb on + strand, within ABID97_RS01795at 352.278 kb on + strand, within ABID97_RS01795at 352.279 kb on - strand, within ABID97_RS01795at 352.495 kb on - strand, within ABID97_RS01795at 352.518 kb on + strand, within ABID97_RS01795at 352.519 kb on - strand, within ABID97_RS01795at 352.519 kb on - strand, within ABID97_RS01795at 352.602 kb on + strand, within ABID97_RS01795at 352.603 kb on - strand, within ABID97_RS01795at 352.603 kb on - strand, within ABID97_RS01795at 352.603 kb on - strand, within ABID97_RS01795at 352.603 kb on - strand, within ABID97_RS01795at 352.603 kb on - strand, within ABID97_RS01795at 352.633 kb on - strand, within ABID97_RS01795at 352.633 kb on - strand, within ABID97_RS01795at 352.720 kb on - strand, within ABID97_RS01795at 352.720 kb on - strand, within ABID97_RS01795at 352.720 kb on - strand, within ABID97_RS01795at 352.915 kb on - strand, within ABID97_RS01795at 353.070 kb on + strandat 353.071 kb on - strandat 353.071 kb on - strandat 353.071 kb on - strandat 353.152 kb on + strandat 353.182 kb on + strandat 353.230 kb on + strand, within ABID97_RS01800at 353.230 kb on + strand, within ABID97_RS01800at 353.231 kb on - strand, within ABID97_RS01800at 353.231 kb on - strand, within ABID97_RS01800at 353.233 kb on + strand, within ABID97_RS01800at 353.233 kb on + strand, within ABID97_RS01800at 353.233 kb on + strand, within ABID97_RS01800at 353.234 kb on - strand, within ABID97_RS01800at 353.234 kb on - strand, within ABID97_RS01800at 353.236 kb on + strand, within ABID97_RS01800at 353.260 kb on + strand, within ABID97_RS01800at 353.260 kb on + strand, within ABID97_RS01800at 353.354 kb on - strand, within ABID97_RS01800at 353.598 kb on + strand, within ABID97_RS01805at 353.598 kb on + strand, within ABID97_RS01805at 353.599 kb on - strand, within ABID97_RS01805at 353.787 kb on + strand, within ABID97_RS01805at 353.787 kb on + strand, within ABID97_RS01805at 353.787 kb on + strand, within ABID97_RS01805at 353.788 kb on - strand, within ABID97_RS01805at 353.802 kb on + strand, within ABID97_RS01805at 353.803 kb on - strand, within ABID97_RS01805at 353.851 kb on - strand, within ABID97_RS01805at 353.851 kb on - strand, within ABID97_RS01805at 353.851 kb on - strand, within ABID97_RS01805at 353.871 kb on + strand, within ABID97_RS01805at 353.892 kb on + strand, within ABID97_RS01805at 353.935 kb on - strand, within ABID97_RS01805at 354.060 kb on + strand, within ABID97_RS01805at 354.060 kb on + strand, within ABID97_RS01805at 354.061 kb on - strand, within ABID97_RS01805

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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352,278 + ABID97_RS01795 0.11 +0.1
352,278 + ABID97_RS01795 0.11 +0.1
352,279 - ABID97_RS01795 0.11 -0.4
352,495 - ABID97_RS01795 0.34 -1.3
352,518 + ABID97_RS01795 0.36 +0.1
352,519 - ABID97_RS01795 0.36 +0.3
352,519 - ABID97_RS01795 0.36 +0.2
352,602 + ABID97_RS01795 0.45 +0.1
352,603 - ABID97_RS01795 0.45 -0.1
352,603 - ABID97_RS01795 0.45 +0.5
352,603 - ABID97_RS01795 0.45 +1.2
352,603 - ABID97_RS01795 0.45 -1.1
352,603 - ABID97_RS01795 0.45 -0.7
352,633 - ABID97_RS01795 0.48 +0.5
352,633 - ABID97_RS01795 0.48 -1.5
352,720 - ABID97_RS01795 0.57 +0.1
352,720 - ABID97_RS01795 0.57 -0.2
352,720 - ABID97_RS01795 0.57 +0.3
352,915 - ABID97_RS01795 0.77 -0.2
353,070 + -0.9
353,071 - -0.3
353,071 - +0.1
353,071 - -0.0
353,152 + +0.8
353,182 + -1.1
353,230 + ABID97_RS01800 0.23 -0.0
353,230 + ABID97_RS01800 0.23 +0.5
353,231 - ABID97_RS01800 0.24 +0.1
353,231 - ABID97_RS01800 0.24 -0.1
353,233 + ABID97_RS01800 0.24 +0.3
353,233 + ABID97_RS01800 0.24 +0.1
353,233 + ABID97_RS01800 0.24 +0.7
353,234 - ABID97_RS01800 0.24 -0.5
353,234 - ABID97_RS01800 0.24 +0.4
353,236 + ABID97_RS01800 0.25 -0.2
353,260 + ABID97_RS01800 0.32 -0.5
353,260 + ABID97_RS01800 0.32 -0.0
353,354 - ABID97_RS01800 0.60 +1.0
353,598 + ABID97_RS01805 0.15 +0.1
353,598 + ABID97_RS01805 0.15 -0.2
353,599 - ABID97_RS01805 0.15 -1.0
353,787 + ABID97_RS01805 0.41 -0.6
353,787 + ABID97_RS01805 0.41 +0.0
353,787 + ABID97_RS01805 0.41 -0.4
353,788 - ABID97_RS01805 0.41 -0.7
353,802 + ABID97_RS01805 0.43 -3.4
353,803 - ABID97_RS01805 0.43 -0.1
353,851 - ABID97_RS01805 0.49 -0.4
353,851 - ABID97_RS01805 0.49 -0.1
353,851 - ABID97_RS01805 0.49 -0.3
353,871 + ABID97_RS01805 0.52 +0.7
353,892 + ABID97_RS01805 0.55 -0.3
353,935 - ABID97_RS01805 0.61 -0.1
354,060 + ABID97_RS01805 0.77 -0.1
354,060 + ABID97_RS01805 0.77 +0.8
354,061 - ABID97_RS01805 0.78 -0.5

Or see this region's nucleotide sequence