Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00965 and ABID97_RS00970 overlap by 4 nucleotides ABID97_RS00970 and ABID97_RS00975 are separated by 121 nucleotides ABID97_RS00975 and ABID97_RS00980 are separated by 10 nucleotides ABID97_RS00980 and ABID97_RS00985 are separated by 146 nucleotides
ABID97_RS00965: ABID97_RS00965 - ATP-binding protein, at 194,660 to 196,048
_RS00965
ABID97_RS00970: ABID97_RS00970 - response regulator transcription factor, at 196,045 to 196,701
_RS00970
ABID97_RS00975: ABID97_RS00975 - winged helix DNA-binding domain-containing protein, at 196,823 to 197,926
_RS00975
ABID97_RS00980: ABID97_RS00980 - pseudouridine synthase, at 197,937 to 198,761
_RS00980
ABID97_RS00985: ABID97_RS00985 - glycosyltransferase, at 198,908 to 200,047
_RS00985
Position (kb) 196
197
198 Strain fitness (log2 ratio) -1
0
1 at 195.924 kb on + strand at 196.166 kb on + strand, within ABID97_RS00970 at 196.167 kb on - strand, within ABID97_RS00970 at 196.167 kb on - strand, within ABID97_RS00970 at 196.568 kb on + strand, within ABID97_RS00970 at 196.569 kb on - strand, within ABID97_RS00970 at 196.569 kb on - strand, within ABID97_RS00970 at 196.727 kb on + strand at 196.728 kb on - strand at 196.787 kb on - strand at 196.789 kb on + strand at 196.790 kb on - strand at 197.787 kb on + strand, within ABID97_RS00975 at 197.788 kb on - strand, within ABID97_RS00975 at 197.788 kb on - strand, within ABID97_RS00975 at 197.788 kb on - strand, within ABID97_RS00975 at 198.284 kb on - strand, within ABID97_RS00980 at 198.530 kb on - strand, within ABID97_RS00980
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 195,924 + -0.3 196,166 + ABID97_RS00970 0.18 -0.4 196,167 - ABID97_RS00970 0.19 +1.6 196,167 - ABID97_RS00970 0.19 -0.4 196,568 + ABID97_RS00970 0.80 +0.2 196,569 - ABID97_RS00970 0.80 -0.0 196,569 - ABID97_RS00970 0.80 +0.1 196,727 + -0.4 196,728 - -0.3 196,787 - +0.2 196,789 + +0.3 196,790 - -0.2 197,787 + ABID97_RS00975 0.87 -0.2 197,788 - ABID97_RS00975 0.87 -1.0 197,788 - ABID97_RS00975 0.87 -1.3 197,788 - ABID97_RS00975 0.87 -0.1 198,284 - ABID97_RS00980 0.42 +0.2 198,530 - ABID97_RS00980 0.72 +0.1
Or see this region's nucleotide sequence