Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00490 and ABID97_RS00495 overlap by 4 nucleotides ABID97_RS00495 and ABID97_RS00500 are separated by 43 nucleotides ABID97_RS00500 and ABID97_RS00505 are separated by 6 nucleotides
ABID97_RS00490: ABID97_RS00490 - D-amino acid aminotransferase, at 107,613 to 108,506
_RS00490
ABID97_RS00495: ABID97_RS00495 - DUF493 family protein, at 108,503 to 108,811
_RS00495
ABID97_RS00500: ABID97_RS00500 - lipoyl(octanoyl) transferase LipB, at 108,855 to 109,523
_RS00500
ABID97_RS00505: ABID97_RS00505 - lipoyl synthase, at 109,530 to 110,510
_RS00505
Position (kb)
108
109
110 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 107.904 kb on + strand, within ABID97_RS00490 at 107.904 kb on + strand, within ABID97_RS00490 at 107.904 kb on + strand, within ABID97_RS00490 at 107.905 kb on - strand, within ABID97_RS00490 at 107.905 kb on - strand, within ABID97_RS00490 at 107.905 kb on - strand, within ABID97_RS00490 at 107.905 kb on - strand, within ABID97_RS00490 at 107.905 kb on - strand, within ABID97_RS00490 at 108.212 kb on - strand, within ABID97_RS00490 at 108.212 kb on - strand, within ABID97_RS00490 at 108.435 kb on + strand at 108.435 kb on + strand at 108.435 kb on + strand at 108.436 kb on - strand at 108.436 kb on - strand at 108.436 kb on - strand at 108.447 kb on + strand at 108.447 kb on + strand at 108.447 kb on + strand at 108.447 kb on + strand at 108.447 kb on + strand at 108.448 kb on - strand at 108.448 kb on - strand at 108.448 kb on - strand at 108.448 kb on - strand at 108.456 kb on + strand at 108.457 kb on - strand at 109.509 kb on + strand at 109.509 kb on + strand at 109.509 kb on + strand at 109.509 kb on + strand at 109.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 107,904 + ABID97_RS00490 0.33 +2.9 107,904 + ABID97_RS00490 0.33 +1.0 107,904 + ABID97_RS00490 0.33 +0.5 107,905 - ABID97_RS00490 0.33 +0.0 107,905 - ABID97_RS00490 0.33 +0.2 107,905 - ABID97_RS00490 0.33 +0.4 107,905 - ABID97_RS00490 0.33 +0.4 107,905 - ABID97_RS00490 0.33 -0.3 108,212 - ABID97_RS00490 0.67 +0.5 108,212 - ABID97_RS00490 0.67 +1.4 108,435 + +1.1 108,435 + -0.8 108,435 + +0.5 108,436 - -2.1 108,436 - -0.9 108,436 - +0.7 108,447 + +0.6 108,447 + +0.5 108,447 + +0.4 108,447 + +0.9 108,447 + +0.7 108,448 - -0.5 108,448 - +0.4 108,448 - -0.5 108,448 - +0.9 108,456 + +0.5 108,457 - +1.2 109,509 + +0.2 109,509 + -0.1 109,509 + +1.7 109,509 + -0.1 109,510 - -0.3
Or see this region's nucleotide sequence