Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00500

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00490 and ABID97_RS00495 overlap by 4 nucleotidesABID97_RS00495 and ABID97_RS00500 are separated by 43 nucleotidesABID97_RS00500 and ABID97_RS00505 are separated by 6 nucleotides ABID97_RS00490: ABID97_RS00490 - D-amino acid aminotransferase, at 107,613 to 108,506 _RS00490 ABID97_RS00495: ABID97_RS00495 - DUF493 family protein, at 108,503 to 108,811 _RS00495 ABID97_RS00500: ABID97_RS00500 - lipoyl(octanoyl) transferase LipB, at 108,855 to 109,523 _RS00500 ABID97_RS00505: ABID97_RS00505 - lipoyl synthase, at 109,530 to 110,510 _RS00505 Position (kb) 108 109 110Strain fitness (log2 ratio) -2 -1 0 1 2 3at 107.904 kb on + strand, within ABID97_RS00490at 107.904 kb on + strand, within ABID97_RS00490at 107.904 kb on + strand, within ABID97_RS00490at 107.905 kb on - strand, within ABID97_RS00490at 107.905 kb on - strand, within ABID97_RS00490at 107.905 kb on - strand, within ABID97_RS00490at 107.905 kb on - strand, within ABID97_RS00490at 107.905 kb on - strand, within ABID97_RS00490at 108.212 kb on - strand, within ABID97_RS00490at 108.212 kb on - strand, within ABID97_RS00490at 108.435 kb on + strandat 108.435 kb on + strandat 108.435 kb on + strandat 108.436 kb on - strandat 108.436 kb on - strandat 108.436 kb on - strandat 108.447 kb on + strandat 108.447 kb on + strandat 108.447 kb on + strandat 108.447 kb on + strandat 108.447 kb on + strandat 108.448 kb on - strandat 108.448 kb on - strandat 108.448 kb on - strandat 108.448 kb on - strandat 108.456 kb on + strandat 108.457 kb on - strandat 109.509 kb on + strandat 109.509 kb on + strandat 109.509 kb on + strandat 109.509 kb on + strandat 109.510 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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107,904 + ABID97_RS00490 0.33 +2.9
107,904 + ABID97_RS00490 0.33 +1.0
107,904 + ABID97_RS00490 0.33 +0.5
107,905 - ABID97_RS00490 0.33 +0.0
107,905 - ABID97_RS00490 0.33 +0.2
107,905 - ABID97_RS00490 0.33 +0.4
107,905 - ABID97_RS00490 0.33 +0.4
107,905 - ABID97_RS00490 0.33 -0.3
108,212 - ABID97_RS00490 0.67 +0.5
108,212 - ABID97_RS00490 0.67 +1.4
108,435 + +1.1
108,435 + -0.8
108,435 + +0.5
108,436 - -2.1
108,436 - -0.9
108,436 - +0.7
108,447 + +0.6
108,447 + +0.5
108,447 + +0.4
108,447 + +0.9
108,447 + +0.7
108,448 - -0.5
108,448 - +0.4
108,448 - -0.5
108,448 - +0.9
108,456 + +0.5
108,457 - +1.2
109,509 + +0.2
109,509 + -0.1
109,509 + +1.7
109,509 + -0.1
109,510 - -0.3

Or see this region's nucleotide sequence