Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27385 and ABIE40_RS27390 are separated by 342 nucleotides ABIE40_RS27390 and ABIE40_RS27395 are separated by 40 nucleotides ABIE40_RS27395 and ABIE40_RS27400 are separated by 684 nucleotides
ABIE40_RS27385: ABIE40_RS27385 - hypothetical protein, at 190,272 to 190,481
_RS27385
ABIE40_RS27390: ABIE40_RS27390 - ferritin-like domain-containing protein, at 190,824 to 191,324
_RS27390
ABIE40_RS27395: ABIE40_RS27395 - hypothetical protein, at 191,365 to 191,655
_RS27395
ABIE40_RS27400: ABIE40_RS27400 - PAS domain-containing sensor histidine kinase, at 192,340 to 194,268
_RS27400
Position (kb) 191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 190.443 kb on + strand, within ABIE40_RS27385 at 190.443 kb on + strand, within ABIE40_RS27385 at 190.443 kb on + strand, within ABIE40_RS27385 at 190.444 kb on - strand, within ABIE40_RS27385 at 190.444 kb on - strand, within ABIE40_RS27385 at 190.444 kb on - strand, within ABIE40_RS27385 at 190.444 kb on - strand, within ABIE40_RS27385 at 190.502 kb on + strand at 190.502 kb on + strand at 190.502 kb on + strand at 190.685 kb on - strand at 190.749 kb on + strand at 190.878 kb on + strand, within ABIE40_RS27390 at 190.878 kb on + strand, within ABIE40_RS27390 at 190.878 kb on + strand, within ABIE40_RS27390 at 190.878 kb on + strand, within ABIE40_RS27390 at 190.878 kb on + strand, within ABIE40_RS27390 at 190.878 kb on + strand, within ABIE40_RS27390 at 190.878 kb on + strand, within ABIE40_RS27390 at 190.878 kb on + strand, within ABIE40_RS27390 at 190.878 kb on + strand, within ABIE40_RS27390 at 190.878 kb on + strand, within ABIE40_RS27390 at 190.878 kb on + strand, within ABIE40_RS27390 at 190.878 kb on + strand, within ABIE40_RS27390 at 190.879 kb on - strand, within ABIE40_RS27390 at 190.879 kb on - strand, within ABIE40_RS27390 at 190.879 kb on - strand, within ABIE40_RS27390 at 190.879 kb on - strand, within ABIE40_RS27390 at 190.879 kb on - strand, within ABIE40_RS27390 at 190.879 kb on - strand, within ABIE40_RS27390 at 190.879 kb on - strand, within ABIE40_RS27390 at 190.879 kb on - strand, within ABIE40_RS27390 at 190.879 kb on - strand, within ABIE40_RS27390 at 190.879 kb on - strand, within ABIE40_RS27390 at 190.879 kb on - strand, within ABIE40_RS27390 at 191.009 kb on - strand, within ABIE40_RS27390 at 191.157 kb on + strand, within ABIE40_RS27390 at 191.158 kb on - strand, within ABIE40_RS27390 at 191.381 kb on - strand at 191.390 kb on + strand at 191.390 kb on + strand at 191.578 kb on + strand, within ABIE40_RS27395 at 191.682 kb on - strand at 191.749 kb on + strand at 191.832 kb on + strand at 191.832 kb on + strand at 191.833 kb on - strand at 191.833 kb on - strand at 191.833 kb on - strand at 191.859 kb on + strand at 191.889 kb on - strand at 191.889 kb on - strand at 191.889 kb on - strand at 191.913 kb on + strand at 191.914 kb on - strand at 191.914 kb on - strand at 192.054 kb on + strand at 192.107 kb on - strand at 192.293 kb on + strand at 192.293 kb on + strand at 192.293 kb on + strand at 192.294 kb on - strand at 192.525 kb on + strand at 192.525 kb on + strand at 192.613 kb on + strand, within ABIE40_RS27400 at 192.613 kb on + strand, within ABIE40_RS27400 at 192.614 kb on - strand, within ABIE40_RS27400 at 192.614 kb on - strand, within ABIE40_RS27400 at 192.648 kb on + strand, within ABIE40_RS27400 at 192.649 kb on - strand, within ABIE40_RS27400
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 190,443 + ABIE40_RS27385 0.81 -0.2 190,443 + ABIE40_RS27385 0.81 -0.9 190,443 + ABIE40_RS27385 0.81 +0.6 190,444 - ABIE40_RS27385 0.82 +0.8 190,444 - ABIE40_RS27385 0.82 +1.1 190,444 - ABIE40_RS27385 0.82 -0.2 190,444 - ABIE40_RS27385 0.82 +1.2 190,502 + -1.9 190,502 + +0.6 190,502 + -0.2 190,685 - -0.2 190,749 + +0.9 190,878 + ABIE40_RS27390 0.11 -0.3 190,878 + ABIE40_RS27390 0.11 -0.8 190,878 + ABIE40_RS27390 0.11 +1.7 190,878 + ABIE40_RS27390 0.11 -0.1 190,878 + ABIE40_RS27390 0.11 +0.1 190,878 + ABIE40_RS27390 0.11 -0.3 190,878 + ABIE40_RS27390 0.11 -0.2 190,878 + ABIE40_RS27390 0.11 +1.0 190,878 + ABIE40_RS27390 0.11 -0.3 190,878 + ABIE40_RS27390 0.11 -1.2 190,878 + ABIE40_RS27390 0.11 -0.7 190,878 + ABIE40_RS27390 0.11 -1.4 190,879 - ABIE40_RS27390 0.11 -1.9 190,879 - ABIE40_RS27390 0.11 -2.7 190,879 - ABIE40_RS27390 0.11 +1.3 190,879 - ABIE40_RS27390 0.11 -0.3 190,879 - ABIE40_RS27390 0.11 -0.3 190,879 - ABIE40_RS27390 0.11 +0.6 190,879 - ABIE40_RS27390 0.11 +0.2 190,879 - ABIE40_RS27390 0.11 -1.1 190,879 - ABIE40_RS27390 0.11 -0.8 190,879 - ABIE40_RS27390 0.11 +1.5 190,879 - ABIE40_RS27390 0.11 +1.8 191,009 - ABIE40_RS27390 0.37 -0.3 191,157 + ABIE40_RS27390 0.66 -0.7 191,158 - ABIE40_RS27390 0.67 +0.4 191,381 - +2.3 191,390 + +0.4 191,390 + -1.6 191,578 + ABIE40_RS27395 0.73 -1.3 191,682 - +0.3 191,749 + -0.6 191,832 + -1.1 191,832 + +0.6 191,833 - -0.6 191,833 - -0.8 191,833 - +1.0 191,859 + -2.8 191,889 - +0.8 191,889 - +0.6 191,889 - -0.1 191,913 + +0.6 191,914 - -0.6 191,914 - +0.5 192,054 + -1.0 192,107 - -3.0 192,293 + -1.0 192,293 + -0.9 192,293 + -0.9 192,294 - -0.1 192,525 + -1.6 192,525 + +2.8 192,613 + ABIE40_RS27400 0.14 -0.4 192,613 + ABIE40_RS27400 0.14 +0.1 192,614 - ABIE40_RS27400 0.14 -0.7 192,614 - ABIE40_RS27400 0.14 -0.1 192,648 + ABIE40_RS27400 0.16 +0.4 192,649 - ABIE40_RS27400 0.16 -0.5
Or see this region's nucleotide sequence