Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS05025

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS05015 and ABIE40_RS05020 overlap by 4 nucleotidesABIE40_RS05020 and ABIE40_RS05025 are separated by 438 nucleotidesABIE40_RS05025 and ABIE40_RS05030 are separated by 64 nucleotides ABIE40_RS05015: ABIE40_RS05015 - cation:proton antiporter, at 980,857 to 981,219 _RS05015 ABIE40_RS05020: ABIE40_RS05020 - monovalent cation/H(+) antiporter subunit G, at 981,216 to 981,548 _RS05020 ABIE40_RS05025: ABIE40_RS05025 - MucR family transcriptional regulator, at 981,987 to 982,418 _RS05025 ABIE40_RS05030: ABIE40_RS05030 - MFS transporter, at 982,483 to 983,682 _RS05030 Position (kb) 981 982 983Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 980.988 kb on + strand, within ABIE40_RS05015at 980.988 kb on + strand, within ABIE40_RS05015at 980.988 kb on + strand, within ABIE40_RS05015at 980.988 kb on + strand, within ABIE40_RS05015at 980.988 kb on + strand, within ABIE40_RS05015at 980.989 kb on - strand, within ABIE40_RS05015at 980.989 kb on - strand, within ABIE40_RS05015at 980.989 kb on - strand, within ABIE40_RS05015at 981.052 kb on + strand, within ABIE40_RS05015at 981.052 kb on + strand, within ABIE40_RS05015at 981.052 kb on + strand, within ABIE40_RS05015at 981.052 kb on + strand, within ABIE40_RS05015at 981.052 kb on + strand, within ABIE40_RS05015at 981.053 kb on - strand, within ABIE40_RS05015at 981.225 kb on + strandat 981.225 kb on + strandat 981.225 kb on + strandat 981.226 kb on - strandat 981.226 kb on - strandat 981.390 kb on + strand, within ABIE40_RS05020at 981.390 kb on + strand, within ABIE40_RS05020at 981.390 kb on + strand, within ABIE40_RS05020at 981.390 kb on + strand, within ABIE40_RS05020at 981.391 kb on - strand, within ABIE40_RS05020at 981.445 kb on + strand, within ABIE40_RS05020at 981.445 kb on + strand, within ABIE40_RS05020at 981.445 kb on + strand, within ABIE40_RS05020at 981.445 kb on + strand, within ABIE40_RS05020at 981.445 kb on + strand, within ABIE40_RS05020at 981.446 kb on - strand, within ABIE40_RS05020at 981.446 kb on - strand, within ABIE40_RS05020at 981.523 kb on + strandat 981.524 kb on - strandat 981.524 kb on - strandat 981.555 kb on - strandat 981.608 kb on - strandat 981.608 kb on - strandat 981.780 kb on + strandat 981.780 kb on + strandat 981.879 kb on + strandat 981.914 kb on - strandat 981.951 kb on + strandat 981.952 kb on - strandat 982.048 kb on + strand, within ABIE40_RS05025at 982.057 kb on - strand, within ABIE40_RS05025at 982.072 kb on + strand, within ABIE40_RS05025at 982.072 kb on + strand, within ABIE40_RS05025at 982.072 kb on + strand, within ABIE40_RS05025at 982.072 kb on + strand, within ABIE40_RS05025at 982.072 kb on + strand, within ABIE40_RS05025at 982.073 kb on + strand, within ABIE40_RS05025at 982.125 kb on - strand, within ABIE40_RS05025at 982.326 kb on + strand, within ABIE40_RS05025at 982.347 kb on + strand, within ABIE40_RS05025at 982.419 kb on + strandat 982.419 kb on + strandat 982.481 kb on + strandat 982.481 kb on + strandat 982.481 kb on + strandat 982.484 kb on + strandat 982.484 kb on + strandat 982.484 kb on + strandat 982.484 kb on + strandat 982.484 kb on + strandat 982.484 kb on + strandat 982.485 kb on - strandat 982.485 kb on - strandat 982.485 kb on - strandat 982.485 kb on - strandat 982.485 kb on - strandat 982.592 kb on + strandat 982.592 kb on + strandat 982.592 kb on + strandat 982.592 kb on + strandat 982.593 kb on - strandat 982.593 kb on - strandat 982.593 kb on - strandat 982.752 kb on - strand, within ABIE40_RS05030at 982.997 kb on + strand, within ABIE40_RS05030at 982.997 kb on + strand, within ABIE40_RS05030at 982.997 kb on + strand, within ABIE40_RS05030at 982.998 kb on - strand, within ABIE40_RS05030at 982.998 kb on - strand, within ABIE40_RS05030at 982.998 kb on - strand, within ABIE40_RS05030at 982.998 kb on - strand, within ABIE40_RS05030at 982.998 kb on - strand, within ABIE40_RS05030at 982.998 kb on - strand, within ABIE40_RS05030at 983.004 kb on + strand, within ABIE40_RS05030at 983.004 kb on + strand, within ABIE40_RS05030at 983.004 kb on + strand, within ABIE40_RS05030at 983.004 kb on + strand, within ABIE40_RS05030at 983.005 kb on - strand, within ABIE40_RS05030at 983.005 kb on - strand, within ABIE40_RS05030at 983.005 kb on - strand, within ABIE40_RS05030at 983.005 kb on - strand, within ABIE40_RS05030at 983.054 kb on + strand, within ABIE40_RS05030at 983.054 kb on + strand, within ABIE40_RS05030at 983.055 kb on - strand, within ABIE40_RS05030at 983.055 kb on - strand, within ABIE40_RS05030at 983.132 kb on + strand, within ABIE40_RS05030at 983.132 kb on + strand, within ABIE40_RS05030at 983.132 kb on + strand, within ABIE40_RS05030at 983.132 kb on + strand, within ABIE40_RS05030at 983.132 kb on + strand, within ABIE40_RS05030at 983.132 kb on + strand, within ABIE40_RS05030at 983.132 kb on + strand, within ABIE40_RS05030at 983.133 kb on - strand, within ABIE40_RS05030at 983.133 kb on - strand, within ABIE40_RS05030at 983.133 kb on - strand, within ABIE40_RS05030at 983.133 kb on - strand, within ABIE40_RS05030at 983.168 kb on + strand, within ABIE40_RS05030at 983.168 kb on + strand, within ABIE40_RS05030at 983.168 kb on + strand, within ABIE40_RS05030at 983.168 kb on + strand, within ABIE40_RS05030at 983.168 kb on + strand, within ABIE40_RS05030at 983.168 kb on + strand, within ABIE40_RS05030at 983.169 kb on - strand, within ABIE40_RS05030at 983.169 kb on - strand, within ABIE40_RS05030at 983.169 kb on - strand, within ABIE40_RS05030at 983.169 kb on - strand, within ABIE40_RS05030at 983.169 kb on - strand, within ABIE40_RS05030at 983.265 kb on + strand, within ABIE40_RS05030at 983.265 kb on + strand, within ABIE40_RS05030at 983.266 kb on - strand, within ABIE40_RS05030at 983.314 kb on - strand, within ABIE40_RS05030at 983.314 kb on - strand, within ABIE40_RS05030at 983.376 kb on - strand, within ABIE40_RS05030at 983.376 kb on - strand, within ABIE40_RS05030

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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980,988 + ABIE40_RS05015 0.36 -1.0
980,988 + ABIE40_RS05015 0.36 +0.5
980,988 + ABIE40_RS05015 0.36 +0.2
980,988 + ABIE40_RS05015 0.36 -0.4
980,988 + ABIE40_RS05015 0.36 -0.8
980,989 - ABIE40_RS05015 0.36 +0.7
980,989 - ABIE40_RS05015 0.36 -0.5
980,989 - ABIE40_RS05015 0.36 -1.3
981,052 + ABIE40_RS05015 0.54 -0.4
981,052 + ABIE40_RS05015 0.54 +0.1
981,052 + ABIE40_RS05015 0.54 +0.5
981,052 + ABIE40_RS05015 0.54 -0.3
981,052 + ABIE40_RS05015 0.54 -0.9
981,053 - ABIE40_RS05015 0.54 +0.5
981,225 + +1.3
981,225 + -0.6
981,225 + -2.2
981,226 - -0.9
981,226 - +0.2
981,390 + ABIE40_RS05020 0.52 -0.2
981,390 + ABIE40_RS05020 0.52 +0.5
981,390 + ABIE40_RS05020 0.52 +1.5
981,390 + ABIE40_RS05020 0.52 +1.5
981,391 - ABIE40_RS05020 0.53 -0.7
981,445 + ABIE40_RS05020 0.69 -0.6
981,445 + ABIE40_RS05020 0.69 -0.3
981,445 + ABIE40_RS05020 0.69 +1.1
981,445 + ABIE40_RS05020 0.69 -0.5
981,445 + ABIE40_RS05020 0.69 -2.7
981,446 - ABIE40_RS05020 0.69 +0.0
981,446 - ABIE40_RS05020 0.69 +0.5
981,523 + +0.4
981,524 - -0.6
981,524 - -0.1
981,555 - -0.4
981,608 - +0.1
981,608 - +0.7
981,780 + -1.5
981,780 + -0.6
981,879 + -3.2
981,914 - +1.1
981,951 + +2.3
981,952 - -0.1
982,048 + ABIE40_RS05025 0.14 -1.8
982,057 - ABIE40_RS05025 0.16 -2.9
982,072 + ABIE40_RS05025 0.20 +1.1
982,072 + ABIE40_RS05025 0.20 -1.4
982,072 + ABIE40_RS05025 0.20 +1.2
982,072 + ABIE40_RS05025 0.20 -1.5
982,072 + ABIE40_RS05025 0.20 -1.5
982,073 + ABIE40_RS05025 0.20 +0.5
982,125 - ABIE40_RS05025 0.32 -1.1
982,326 + ABIE40_RS05025 0.78 +0.3
982,347 + ABIE40_RS05025 0.83 -1.5
982,419 + -0.2
982,419 + -1.8
982,481 + -0.7
982,481 + +1.1
982,481 + -0.3
982,484 + -0.2
982,484 + -1.1
982,484 + -0.1
982,484 + -0.3
982,484 + +0.3
982,484 + -1.3
982,485 - -0.0
982,485 - -0.7
982,485 - -0.7
982,485 - -0.3
982,485 - -1.5
982,592 + -2.0
982,592 + +1.2
982,592 + +0.8
982,592 + +0.1
982,593 - +0.7
982,593 - -0.7
982,593 - +0.5
982,752 - ABIE40_RS05030 0.22 -0.4
982,997 + ABIE40_RS05030 0.43 +0.4
982,997 + ABIE40_RS05030 0.43 +1.7
982,997 + ABIE40_RS05030 0.43 -1.7
982,998 - ABIE40_RS05030 0.43 -0.7
982,998 - ABIE40_RS05030 0.43 -0.2
982,998 - ABIE40_RS05030 0.43 +1.7
982,998 - ABIE40_RS05030 0.43 -1.4
982,998 - ABIE40_RS05030 0.43 +0.4
982,998 - ABIE40_RS05030 0.43 +1.3
983,004 + ABIE40_RS05030 0.43 -1.6
983,004 + ABIE40_RS05030 0.43 +0.5
983,004 + ABIE40_RS05030 0.43 +1.7
983,004 + ABIE40_RS05030 0.43 -0.7
983,005 - ABIE40_RS05030 0.43 +0.9
983,005 - ABIE40_RS05030 0.43 +0.5
983,005 - ABIE40_RS05030 0.43 +1.0
983,005 - ABIE40_RS05030 0.43 +1.7
983,054 + ABIE40_RS05030 0.48 +0.5
983,054 + ABIE40_RS05030 0.48 +0.4
983,055 - ABIE40_RS05030 0.48 -0.0
983,055 - ABIE40_RS05030 0.48 -0.7
983,132 + ABIE40_RS05030 0.54 +0.5
983,132 + ABIE40_RS05030 0.54 +0.6
983,132 + ABIE40_RS05030 0.54 -1.0
983,132 + ABIE40_RS05030 0.54 +1.7
983,132 + ABIE40_RS05030 0.54 -0.6
983,132 + ABIE40_RS05030 0.54 -0.9
983,132 + ABIE40_RS05030 0.54 +0.1
983,133 - ABIE40_RS05030 0.54 -0.2
983,133 - ABIE40_RS05030 0.54 +0.5
983,133 - ABIE40_RS05030 0.54 +0.6
983,133 - ABIE40_RS05030 0.54 +0.9
983,168 + ABIE40_RS05030 0.57 -0.2
983,168 + ABIE40_RS05030 0.57 -0.6
983,168 + ABIE40_RS05030 0.57 +0.4
983,168 + ABIE40_RS05030 0.57 +0.1
983,168 + ABIE40_RS05030 0.57 -0.9
983,168 + ABIE40_RS05030 0.57 -0.2
983,169 - ABIE40_RS05030 0.57 +0.9
983,169 - ABIE40_RS05030 0.57 -0.3
983,169 - ABIE40_RS05030 0.57 +0.3
983,169 - ABIE40_RS05030 0.57 -0.2
983,169 - ABIE40_RS05030 0.57 -0.4
983,265 + ABIE40_RS05030 0.65 +0.3
983,265 + ABIE40_RS05030 0.65 -1.9
983,266 - ABIE40_RS05030 0.65 +0.2
983,314 - ABIE40_RS05030 0.69 -0.7
983,314 - ABIE40_RS05030 0.69 -0.6
983,376 - ABIE40_RS05030 0.74 -1.1
983,376 - ABIE40_RS05030 0.74 +0.3

Or see this region's nucleotide sequence