Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28000

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS27995 and ABID97_RS28000 are separated by 47 nucleotidesABID97_RS28000 and ABID97_RS28005 are separated by 40 nucleotides ABID97_RS27995: ABID97_RS27995 - VOC family protein, at 517,700 to 518,707 _RS27995 ABID97_RS28000: ABID97_RS28000 - NADPH-dependent FMN reductase, at 518,755 to 519,342 _RS28000 ABID97_RS28005: ABID97_RS28005 - phosphopyruvate hydratase, at 519,383 to 520,462 _RS28005 Position (kb) 518 519 520Strain fitness (log2 ratio) -2 -1 0 1at 518.011 kb on - strand, within ABID97_RS27995at 518.070 kb on + strand, within ABID97_RS27995at 518.611 kb on - strandat 519.204 kb on - strand, within ABID97_RS28000at 519.916 kb on - strand, within ABID97_RS28005at 520.119 kb on + strand, within ABID97_RS28005

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
518,011 - ABID97_RS27995 0.31 -0.0
518,070 + ABID97_RS27995 0.37 -2.1
518,611 - +0.0
519,204 - ABID97_RS28000 0.76 +1.0
519,916 - ABID97_RS28005 0.49 +0.7
520,119 + ABID97_RS28005 0.68 +0.4

Or see this region's nucleotide sequence