Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27255

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27245 and ABID97_RS27250 are separated by 264 nucleotidesABID97_RS27250 and ABID97_RS27255 are separated by 115 nucleotidesABID97_RS27255 and ABID97_RS27260 are separated by 109 nucleotides ABID97_RS27245: ABID97_RS27245 - DUF6228 family protein, at 363,939 to 364,358 _RS27245 ABID97_RS27250: ABID97_RS27250 - antibiotic biosynthesis monooxygenase, at 364,623 to 364,946 _RS27250 ABID97_RS27255: ABID97_RS27255 - LysR substrate-binding domain-containing protein, at 365,062 to 365,955 _RS27255 ABID97_RS27260: ABID97_RS27260 - AraC family transcriptional regulator, at 366,065 to 366,934 _RS27260 Position (kb) 365 366Strain fitness (log2 ratio) -1 0 1at 364.263 kb on + strand, within ABID97_RS27245at 364.264 kb on - strand, within ABID97_RS27245at 365.372 kb on + strand, within ABID97_RS27255at 365.421 kb on - strand, within ABID97_RS27255at 366.066 kb on + strandat 366.921 kb on + strandat 366.921 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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364,263 + ABID97_RS27245 0.77 +0.6
364,264 - ABID97_RS27245 0.77 -0.2
365,372 + ABID97_RS27255 0.35 -1.6
365,421 - ABID97_RS27255 0.40 -0.7
366,066 + +0.6
366,921 + -0.3
366,921 + -0.0

Or see this region's nucleotide sequence