Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19445

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19435 and ABID97_RS19440 are separated by 1 nucleotidesABID97_RS19440 and ABID97_RS19445 are separated by 105 nucleotidesABID97_RS19445 and ABID97_RS19450 are separated by 23 nucleotides ABID97_RS19435: ABID97_RS19435 - 3-oxoacid CoA-transferase subunit B, at 4,013,447 to 4,014,085 _RS19435 ABID97_RS19440: ABID97_RS19440 - CoA transferase subunit A, at 4,014,087 to 4,014,890 _RS19440 ABID97_RS19445: ABID97_RS19445 - LuxR C-terminal-related transcriptional regulator, at 4,014,996 to 4,015,562 _RS19445 ABID97_RS19450: ABID97_RS19450 - tripartite tricarboxylate transporter substrate binding protein, at 4,015,586 to 4,016,563 _RS19450 Position (kb) 4014 4015 4016Strain fitness (log2 ratio) -1 0 1at 4014.025 kb on - strandat 4014.262 kb on + strand, within ABID97_RS19440at 4014.263 kb on - strand, within ABID97_RS19440at 4014.466 kb on + strand, within ABID97_RS19440at 4014.878 kb on - strandat 4014.956 kb on - strandat 4014.956 kb on - strandat 4014.956 kb on - strandat 4014.956 kb on - strandat 4014.959 kb on + strandat 4014.967 kb on + strandat 4014.968 kb on - strandat 4015.219 kb on - strand, within ABID97_RS19445at 4015.513 kb on - strandat 4015.677 kb on + strandat 4015.678 kb on - strandat 4015.678 kb on - strandat 4016.008 kb on - strand, within ABID97_RS19450at 4016.094 kb on + strand, within ABID97_RS19450at 4016.094 kb on + strand, within ABID97_RS19450at 4016.274 kb on + strand, within ABID97_RS19450at 4016.275 kb on - strand, within ABID97_RS19450at 4016.302 kb on - strand, within ABID97_RS19450

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,014,025 - +0.3
4,014,262 + ABID97_RS19440 0.22 -0.8
4,014,263 - ABID97_RS19440 0.22 -1.6
4,014,466 + ABID97_RS19440 0.47 -0.1
4,014,878 - -0.0
4,014,956 - -0.2
4,014,956 - +0.1
4,014,956 - +0.0
4,014,956 - -0.8
4,014,959 + -1.1
4,014,967 + -0.0
4,014,968 - +0.4
4,015,219 - ABID97_RS19445 0.39 +1.0
4,015,513 - -0.8
4,015,677 + -0.5
4,015,678 - +0.6
4,015,678 - -0.9
4,016,008 - ABID97_RS19450 0.43 +0.5
4,016,094 + ABID97_RS19450 0.52 +0.7
4,016,094 + ABID97_RS19450 0.52 -0.0
4,016,274 + ABID97_RS19450 0.70 -0.8
4,016,275 - ABID97_RS19450 0.70 +0.5
4,016,302 - ABID97_RS19450 0.73 +0.0

Or see this region's nucleotide sequence