Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14210

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14200 and ABID97_RS14205 are separated by 150 nucleotidesABID97_RS14205 and ABID97_RS14210 are separated by 19 nucleotidesABID97_RS14210 and ABID97_RS14215 are separated by 4 nucleotidesABID97_RS14215 and ABID97_RS14220 overlap by 8 nucleotides ABID97_RS14200: ABID97_RS14200 - pseudouridine synthase, at 2,953,528 to 2,955,336 _RS14200 ABID97_RS14205: ABID97_RS14205 - nucleoside-diphosphate kinase, at 2,955,487 to 2,955,912 _RS14205 ABID97_RS14210: ABID97_RS14210 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,955,932 to 2,957,083 _RS14210 ABID97_RS14215: ABID97_RS14215 - type IV pilus biogenesis/stability protein PilW, at 2,957,088 to 2,957,942 _RS14215 ABID97_RS14220: ABID97_RS14220 - helix-turn-helix domain-containing protein, at 2,957,935 to 2,958,909 _RS14220 Position (kb) 2955 2956 2957 2958Strain fitness (log2 ratio) -1 0 1 2 3at 2955.111 kb on + strand, within ABID97_RS14200at 2955.112 kb on - strand, within ABID97_RS14200at 2955.112 kb on - strand, within ABID97_RS14200at 2955.901 kb on + strandat 2955.901 kb on + strandat 2956.213 kb on - strand, within ABID97_RS14210at 2956.445 kb on + strand, within ABID97_RS14210at 2956.445 kb on + strand, within ABID97_RS14210at 2956.445 kb on + strand, within ABID97_RS14210at 2956.445 kb on + strand, within ABID97_RS14210at 2956.445 kb on + strand, within ABID97_RS14210at 2956.493 kb on + strand, within ABID97_RS14210at 2956.493 kb on + strand, within ABID97_RS14210at 2956.646 kb on + strand, within ABID97_RS14210at 2956.682 kb on + strand, within ABID97_RS14210at 2957.415 kb on + strand, within ABID97_RS14215at 2957.415 kb on + strand, within ABID97_RS14215at 2957.416 kb on - strand, within ABID97_RS14215at 2957.416 kb on - strand, within ABID97_RS14215at 2957.416 kb on - strand, within ABID97_RS14215at 2957.416 kb on - strand, within ABID97_RS14215at 2957.416 kb on - strand, within ABID97_RS14215at 2957.505 kb on + strand, within ABID97_RS14215at 2957.584 kb on - strand, within ABID97_RS14215at 2957.676 kb on + strand, within ABID97_RS14215at 2957.677 kb on - strand, within ABID97_RS14215at 2957.677 kb on - strand, within ABID97_RS14215at 2957.911 kb on + strandat 2957.912 kb on - strandat 2957.916 kb on + strandat 2957.917 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,955,111 + ABID97_RS14200 0.88 -1.0
2,955,112 - ABID97_RS14200 0.88 -1.7
2,955,112 - ABID97_RS14200 0.88 -1.4
2,955,901 + +1.3
2,955,901 + -0.6
2,956,213 - ABID97_RS14210 0.24 -0.2
2,956,445 + ABID97_RS14210 0.45 +0.2
2,956,445 + ABID97_RS14210 0.45 +1.9
2,956,445 + ABID97_RS14210 0.45 -0.2
2,956,445 + ABID97_RS14210 0.45 -0.8
2,956,445 + ABID97_RS14210 0.45 -1.6
2,956,493 + ABID97_RS14210 0.49 -0.9
2,956,493 + ABID97_RS14210 0.49 -1.3
2,956,646 + ABID97_RS14210 0.62 +0.1
2,956,682 + ABID97_RS14210 0.65 -0.8
2,957,415 + ABID97_RS14215 0.38 +2.8
2,957,415 + ABID97_RS14215 0.38 +0.5
2,957,416 - ABID97_RS14215 0.38 +2.2
2,957,416 - ABID97_RS14215 0.38 +2.1
2,957,416 - ABID97_RS14215 0.38 +2.5
2,957,416 - ABID97_RS14215 0.38 +3.2
2,957,416 - ABID97_RS14215 0.38 +1.1
2,957,505 + ABID97_RS14215 0.49 +0.4
2,957,584 - ABID97_RS14215 0.58 +1.1
2,957,676 + ABID97_RS14215 0.69 +0.5
2,957,677 - ABID97_RS14215 0.69 +1.3
2,957,677 - ABID97_RS14215 0.69 +1.9
2,957,911 + +2.0
2,957,912 - +0.7
2,957,916 + +1.0
2,957,917 - +2.2

Or see this region's nucleotide sequence