Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11685

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS11675 and ABID97_RS11680 overlap by 101 nucleotidesABID97_RS11680 and ABID97_RS11685 overlap by 4 nucleotidesABID97_RS11685 and ABID97_RS11690 are separated by 23 nucleotides ABID97_RS11675: ABID97_RS11675 - ABC transporter ATP-binding protein, at 2,412,338 to 2,413,291 _RS11675 ABID97_RS11680: ABID97_RS11680 - ATP-binding cassette domain-containing protein, at 2,413,191 to 2,413,991 _RS11680 ABID97_RS11685: ABID97_RS11685 - M20/M25/M40 family metallo-hydrolase, at 2,413,988 to 2,415,205 _RS11685 ABID97_RS11690: ABID97_RS11690 - hydantoinase B/oxoprolinase family protein, at 2,415,229 to 2,418,876 _RS11690 Position (kb) 2413 2414 2415 2416Strain fitness (log2 ratio) -1 0 1 2at 2413.197 kb on + strandat 2413.582 kb on + strand, within ABID97_RS11680at 2413.782 kb on + strand, within ABID97_RS11680at 2414.105 kb on + strandat 2414.106 kb on - strandat 2414.349 kb on - strand, within ABID97_RS11685at 2414.796 kb on - strand, within ABID97_RS11685at 2415.108 kb on - strandat 2415.168 kb on - strandat 2415.234 kb on + strandat 2415.309 kb on + strandat 2415.625 kb on + strand, within ABID97_RS11690at 2416.145 kb on - strand, within ABID97_RS11690

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
2,413,197 + +1.9
2,413,582 + ABID97_RS11680 0.49 +1.4
2,413,782 + ABID97_RS11680 0.74 +0.9
2,414,105 + +0.7
2,414,106 - +0.3
2,414,349 - ABID97_RS11685 0.30 -0.2
2,414,796 - ABID97_RS11685 0.66 +0.5
2,415,108 - +0.3
2,415,168 - +0.0
2,415,234 + +0.8
2,415,309 + -0.7
2,415,625 + ABID97_RS11690 0.11 +0.1
2,416,145 - ABID97_RS11690 0.25 -0.2

Or see this region's nucleotide sequence