Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11675 and ABID97_RS11680 overlap by 101 nucleotides ABID97_RS11680 and ABID97_RS11685 overlap by 4 nucleotides ABID97_RS11685 and ABID97_RS11690 are separated by 23 nucleotides
ABID97_RS11675: ABID97_RS11675 - ABC transporter ATP-binding protein, at 2,412,338 to 2,413,291
_RS11675
ABID97_RS11680: ABID97_RS11680 - ATP-binding cassette domain-containing protein, at 2,413,191 to 2,413,991
_RS11680
ABID97_RS11685: ABID97_RS11685 - M20/M25/M40 family metallo-hydrolase, at 2,413,988 to 2,415,205
_RS11685
ABID97_RS11690: ABID97_RS11690 - hydantoinase B/oxoprolinase family protein, at 2,415,229 to 2,418,876
_RS11690
Position (kb)
2413
2414
2415
2416 Strain fitness (log2 ratio)
-1
0
1
2 at 2413.197 kb on + strand at 2413.582 kb on + strand, within ABID97_RS11680 at 2413.782 kb on + strand, within ABID97_RS11680 at 2414.105 kb on + strand at 2414.106 kb on - strand at 2414.349 kb on - strand, within ABID97_RS11685 at 2414.796 kb on - strand, within ABID97_RS11685 at 2415.108 kb on - strand at 2415.168 kb on - strand at 2415.234 kb on + strand at 2415.309 kb on + strand at 2415.625 kb on + strand, within ABID97_RS11690 at 2416.145 kb on - strand, within ABID97_RS11690
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,413,197 + +1.9 2,413,582 + ABID97_RS11680 0.49 +1.4 2,413,782 + ABID97_RS11680 0.74 +0.9 2,414,105 + +0.7 2,414,106 - +0.3 2,414,349 - ABID97_RS11685 0.30 -0.2 2,414,796 - ABID97_RS11685 0.66 +0.5 2,415,108 - +0.3 2,415,168 - +0.0 2,415,234 + +0.8 2,415,309 + -0.7 2,415,625 + ABID97_RS11690 0.11 +0.1 2,416,145 - ABID97_RS11690 0.25 -0.2
Or see this region's nucleotide sequence