Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11655

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11650 and ABID97_RS11655 are separated by 81 nucleotidesABID97_RS11655 and ABID97_RS11660 are separated by 481 nucleotides ABID97_RS11650: ABID97_RS11650 - carbon-nitrogen hydrolase family protein, at 2,406,499 to 2,407,419 _RS11650 ABID97_RS11655: ABID97_RS11655 - LysR family transcriptional regulator, at 2,407,501 to 2,408,421 _RS11655 ABID97_RS11660: ABID97_RS11660 - ABC transporter substrate-binding protein, at 2,408,903 to 2,410,468 _RS11660 Position (kb) 2407 2408 2409Strain fitness (log2 ratio) -2 -1 0 1 2at 2406.604 kb on + strand, within ABID97_RS11650at 2406.838 kb on - strand, within ABID97_RS11650at 2406.887 kb on + strand, within ABID97_RS11650at 2406.887 kb on + strand, within ABID97_RS11650at 2406.887 kb on + strand, within ABID97_RS11650at 2406.887 kb on + strand, within ABID97_RS11650at 2406.888 kb on - strand, within ABID97_RS11650at 2406.888 kb on - strand, within ABID97_RS11650at 2407.039 kb on - strand, within ABID97_RS11650at 2407.089 kb on + strand, within ABID97_RS11650at 2407.090 kb on - strand, within ABID97_RS11650at 2407.196 kb on + strand, within ABID97_RS11650at 2407.196 kb on + strand, within ABID97_RS11650at 2407.197 kb on - strand, within ABID97_RS11650at 2407.197 kb on - strand, within ABID97_RS11650at 2407.199 kb on + strand, within ABID97_RS11650at 2407.324 kb on - strand, within ABID97_RS11650at 2407.444 kb on - strandat 2407.561 kb on + strandat 2407.652 kb on - strand, within ABID97_RS11655at 2407.652 kb on - strand, within ABID97_RS11655at 2407.976 kb on + strand, within ABID97_RS11655at 2408.044 kb on + strand, within ABID97_RS11655at 2408.044 kb on + strand, within ABID97_RS11655at 2408.045 kb on - strand, within ABID97_RS11655at 2408.045 kb on - strand, within ABID97_RS11655at 2408.081 kb on - strand, within ABID97_RS11655at 2408.419 kb on + strandat 2408.566 kb on + strandat 2408.566 kb on + strandat 2408.566 kb on + strandat 2408.567 kb on - strandat 2408.567 kb on - strandat 2408.570 kb on + strandat 2408.570 kb on + strandat 2408.571 kb on - strandat 2408.694 kb on - strandat 2408.748 kb on + strandat 2408.749 kb on - strandat 2408.758 kb on - strandat 2408.837 kb on + strandat 2408.837 kb on + strandat 2408.838 kb on - strandat 2408.884 kb on - strandat 2409.110 kb on + strand, within ABID97_RS11660

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,406,604 + ABID97_RS11650 0.11 -0.4
2,406,838 - ABID97_RS11650 0.37 -0.2
2,406,887 + ABID97_RS11650 0.42 -0.3
2,406,887 + ABID97_RS11650 0.42 +0.5
2,406,887 + ABID97_RS11650 0.42 -0.6
2,406,887 + ABID97_RS11650 0.42 +0.5
2,406,888 - ABID97_RS11650 0.42 -1.5
2,406,888 - ABID97_RS11650 0.42 +0.1
2,407,039 - ABID97_RS11650 0.59 +0.2
2,407,089 + ABID97_RS11650 0.64 +0.6
2,407,090 - ABID97_RS11650 0.64 +0.2
2,407,196 + ABID97_RS11650 0.76 -1.8
2,407,196 + ABID97_RS11650 0.76 +0.2
2,407,197 - ABID97_RS11650 0.76 -0.6
2,407,197 - ABID97_RS11650 0.76 -0.2
2,407,199 + ABID97_RS11650 0.76 +0.2
2,407,324 - ABID97_RS11650 0.90 +1.8
2,407,444 - -0.4
2,407,561 + +0.7
2,407,652 - ABID97_RS11655 0.16 -0.1
2,407,652 - ABID97_RS11655 0.16 +0.4
2,407,976 + ABID97_RS11655 0.52 -0.2
2,408,044 + ABID97_RS11655 0.59 +0.2
2,408,044 + ABID97_RS11655 0.59 +0.8
2,408,045 - ABID97_RS11655 0.59 -0.2
2,408,045 - ABID97_RS11655 0.59 +0.3
2,408,081 - ABID97_RS11655 0.63 -0.1
2,408,419 + -0.3
2,408,566 + +0.2
2,408,566 + -1.6
2,408,566 + +0.5
2,408,567 - -0.2
2,408,567 - +2.2
2,408,570 + +0.3
2,408,570 + +0.0
2,408,571 - -0.0
2,408,694 - +0.4
2,408,748 + +0.5
2,408,749 - -0.3
2,408,758 - -1.1
2,408,837 + -0.2
2,408,837 + -0.3
2,408,838 - +0.2
2,408,884 - -0.2
2,409,110 + ABID97_RS11660 0.13 +0.8

Or see this region's nucleotide sequence