Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03720 and ABID97_RS03725 are separated by 10 nucleotides ABID97_RS03725 and ABID97_RS03730 are separated by 6 nucleotides ABID97_RS03730 and ABID97_RS03735 are separated by 13 nucleotides ABID97_RS03735 and ABID97_RS03740 overlap by 4 nucleotides
ABID97_RS03720: ABID97_RS03720 - 4-hydroxy-2-oxoheptanedioate aldolase, at 765,429 to 766,268
_RS03720
ABID97_RS03725: ABID97_RS03725 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 766,279 to 767,082
_RS03725
ABID97_RS03730: ABID97_RS03730 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 767,089 to 767,493
_RS03730
ABID97_RS03735: ABID97_RS03735 - extradiol ring-cleavage dioxygenase, at 767,507 to 768,334
_RS03735
ABID97_RS03740: ABID97_RS03740 - aromatic ring-opening dioxygenase subunit LigA, at 768,331 to 768,666
_RS03740
Position (kb) 767
768 Strain fitness (log2 ratio) -1
0
1 at 766.184 kb on - strand, within ABID97_RS03720 at 766.317 kb on - strand at 766.351 kb on - strand at 766.351 kb on - strand at 766.506 kb on - strand, within ABID97_RS03725 at 767.288 kb on + strand, within ABID97_RS03730 at 767.289 kb on - strand, within ABID97_RS03730 at 767.471 kb on + strand at 767.472 kb on - strand at 767.472 kb on - strand at 767.671 kb on - strand, within ABID97_RS03735 at 768.108 kb on + strand, within ABID97_RS03735 at 768.108 kb on + strand, within ABID97_RS03735 at 768.334 kb on + strand at 768.334 kb on + strand at 768.398 kb on + strand, within ABID97_RS03740
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 766,184 - ABID97_RS03720 0.90 +1.0 766,317 - +0.3 766,351 - -0.3 766,351 - -0.6 766,506 - ABID97_RS03725 0.28 +0.0 767,288 + ABID97_RS03730 0.49 +0.2 767,289 - ABID97_RS03730 0.49 +0.5 767,471 + +0.2 767,472 - -0.4 767,472 - +0.2 767,671 - ABID97_RS03735 0.20 -0.7 768,108 + ABID97_RS03735 0.73 -0.1 768,108 + ABID97_RS03735 0.73 +0.1 768,334 + +0.2 768,334 + +0.2 768,398 + ABID97_RS03740 0.20 +0.2
Or see this region's nucleotide sequence