Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2240

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2239 and B158DRAFT_2240 are separated by 50 nucleotidesB158DRAFT_2240 and B158DRAFT_2241 are separated by 148 nucleotides B158DRAFT_2239: B158DRAFT_2239 - peptide chain release factor 3, at 395,659 to 397,248 _2239 B158DRAFT_2240: B158DRAFT_2240 - Mg-dependent DNase, at 397,299 to 398,096 _2240 B158DRAFT_2241: B158DRAFT_2241 - Outer membrane cobalamin receptor protein, at 398,245 to 401,133 _2241 Position (kb) 397 398 399Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 396.346 kb on + strand, within B158DRAFT_2239at 396.357 kb on + strand, within B158DRAFT_2239at 396.474 kb on + strand, within B158DRAFT_2239at 396.482 kb on - strand, within B158DRAFT_2239at 396.493 kb on + strand, within B158DRAFT_2239at 396.501 kb on - strand, within B158DRAFT_2239at 396.516 kb on - strand, within B158DRAFT_2239at 396.517 kb on + strand, within B158DRAFT_2239at 396.521 kb on + strand, within B158DRAFT_2239at 396.524 kb on - strand, within B158DRAFT_2239at 396.524 kb on - strand, within B158DRAFT_2239at 396.589 kb on - strand, within B158DRAFT_2239at 396.641 kb on - strand, within B158DRAFT_2239at 396.691 kb on + strand, within B158DRAFT_2239at 396.691 kb on + strand, within B158DRAFT_2239at 396.691 kb on + strand, within B158DRAFT_2239at 396.691 kb on + strand, within B158DRAFT_2239at 396.699 kb on - strand, within B158DRAFT_2239at 396.699 kb on - strand, within B158DRAFT_2239at 396.699 kb on - strand, within B158DRAFT_2239at 396.731 kb on - strand, within B158DRAFT_2239at 396.742 kb on + strand, within B158DRAFT_2239at 396.816 kb on + strand, within B158DRAFT_2239at 396.816 kb on + strand, within B158DRAFT_2239at 396.824 kb on - strand, within B158DRAFT_2239at 396.844 kb on + strand, within B158DRAFT_2239at 396.874 kb on + strand, within B158DRAFT_2239at 396.931 kb on + strand, within B158DRAFT_2239at 396.944 kb on - strand, within B158DRAFT_2239at 396.975 kb on - strand, within B158DRAFT_2239at 396.993 kb on - strand, within B158DRAFT_2239at 397.000 kb on - strand, within B158DRAFT_2239at 397.076 kb on + strand, within B158DRAFT_2239at 397.076 kb on + strand, within B158DRAFT_2239at 397.076 kb on + strand, within B158DRAFT_2239at 397.076 kb on + strand, within B158DRAFT_2239at 397.081 kb on - strand, within B158DRAFT_2239at 397.084 kb on - strand, within B158DRAFT_2239at 397.100 kb on + strandat 397.108 kb on - strandat 397.138 kb on + strandat 397.146 kb on - strandat 397.155 kb on + strandat 397.155 kb on + strandat 397.209 kb on - strandat 397.211 kb on + strandat 397.211 kb on + strandat 397.219 kb on - strandat 397.219 kb on - strandat 397.219 kb on - strandat 397.266 kb on - strandat 397.283 kb on + strandat 397.291 kb on - strandat 397.309 kb on - strandat 397.309 kb on - strandat 397.313 kb on + strandat 397.361 kb on - strandat 397.361 kb on - strandat 397.361 kb on - strandat 397.379 kb on + strand, within B158DRAFT_2240at 397.400 kb on - strand, within B158DRAFT_2240at 397.451 kb on + strand, within B158DRAFT_2240at 397.628 kb on + strand, within B158DRAFT_2240at 397.683 kb on + strand, within B158DRAFT_2240at 397.755 kb on + strand, within B158DRAFT_2240at 397.763 kb on - strand, within B158DRAFT_2240at 397.763 kb on - strand, within B158DRAFT_2240at 397.809 kb on - strand, within B158DRAFT_2240at 397.811 kb on + strand, within B158DRAFT_2240at 397.819 kb on - strand, within B158DRAFT_2240at 397.819 kb on - strand, within B158DRAFT_2240at 397.819 kb on - strand, within B158DRAFT_2240at 397.856 kb on + strand, within B158DRAFT_2240at 397.856 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.864 kb on - strand, within B158DRAFT_2240at 397.864 kb on - strand, within B158DRAFT_2240at 397.864 kb on - strand, within B158DRAFT_2240at 397.865 kb on - strand, within B158DRAFT_2240at 397.865 kb on - strand, within B158DRAFT_2240at 397.865 kb on - strand, within B158DRAFT_2240at 397.865 kb on - strand, within B158DRAFT_2240at 397.876 kb on + strand, within B158DRAFT_2240at 397.876 kb on + strand, within B158DRAFT_2240at 397.876 kb on + strand, within B158DRAFT_2240at 397.876 kb on + strand, within B158DRAFT_2240at 397.884 kb on - strand, within B158DRAFT_2240at 397.952 kb on - strand, within B158DRAFT_2240at 397.983 kb on + strand, within B158DRAFT_2240at 397.991 kb on - strand, within B158DRAFT_2240at 397.991 kb on - strand, within B158DRAFT_2240at 398.078 kb on + strandat 398.156 kb on - strandat 398.156 kb on - strandat 398.185 kb on + strandat 398.294 kb on + strandat 398.294 kb on + strandat 398.294 kb on + strandat 398.302 kb on - strandat 398.302 kb on - strandat 398.302 kb on - strandat 398.302 kb on - strandat 398.391 kb on + strandat 398.397 kb on + strandat 398.397 kb on + strandat 398.397 kb on + strandat 398.405 kb on - strandat 398.414 kb on - strandat 398.422 kb on + strandat 398.422 kb on + strandat 398.422 kb on + strandat 398.422 kb on + strandat 398.422 kb on + strandat 398.422 kb on + strandat 398.422 kb on + strandat 398.430 kb on - strandat 398.430 kb on - strandat 398.430 kb on - strandat 398.454 kb on + strandat 398.462 kb on - strandat 398.535 kb on + strand, within B158DRAFT_2241at 398.555 kb on + strand, within B158DRAFT_2241at 398.578 kb on + strand, within B158DRAFT_2241at 398.578 kb on + strand, within B158DRAFT_2241at 398.618 kb on - strand, within B158DRAFT_2241at 398.623 kb on - strand, within B158DRAFT_2241at 398.667 kb on - strand, within B158DRAFT_2241at 398.670 kb on + strand, within B158DRAFT_2241at 398.764 kb on - strand, within B158DRAFT_2241at 398.792 kb on + strand, within B158DRAFT_2241at 398.794 kb on + strand, within B158DRAFT_2241at 398.800 kb on + strand, within B158DRAFT_2241at 398.809 kb on + strand, within B158DRAFT_2241at 398.817 kb on - strand, within B158DRAFT_2241at 398.855 kb on - strand, within B158DRAFT_2241at 398.964 kb on + strand, within B158DRAFT_2241at 398.992 kb on + strand, within B158DRAFT_2241at 399.003 kb on + strand, within B158DRAFT_2241at 399.007 kb on + strand, within B158DRAFT_2241at 399.019 kb on + strand, within B158DRAFT_2241at 399.019 kb on + strand, within B158DRAFT_2241at 399.058 kb on + strand, within B158DRAFT_2241

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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396,346 + B158DRAFT_2239 0.43 +1.2
396,357 + B158DRAFT_2239 0.44 +0.2
396,474 + B158DRAFT_2239 0.51 +0.5
396,482 - B158DRAFT_2239 0.52 -0.3
396,493 + B158DRAFT_2239 0.52 +1.0
396,501 - B158DRAFT_2239 0.53 +0.0
396,516 - B158DRAFT_2239 0.54 -0.3
396,517 + B158DRAFT_2239 0.54 -0.3
396,521 + B158DRAFT_2239 0.54 -1.1
396,524 - B158DRAFT_2239 0.54 -0.1
396,524 - B158DRAFT_2239 0.54 +0.5
396,589 - B158DRAFT_2239 0.58 -0.7
396,641 - B158DRAFT_2239 0.62 -0.1
396,691 + B158DRAFT_2239 0.65 -0.3
396,691 + B158DRAFT_2239 0.65 -0.2
396,691 + B158DRAFT_2239 0.65 -1.0
396,691 + B158DRAFT_2239 0.65 -0.7
396,699 - B158DRAFT_2239 0.65 -0.1
396,699 - B158DRAFT_2239 0.65 -0.4
396,699 - B158DRAFT_2239 0.65 -0.5
396,731 - B158DRAFT_2239 0.67 -0.5
396,742 + B158DRAFT_2239 0.68 +0.8
396,816 + B158DRAFT_2239 0.73 -0.2
396,816 + B158DRAFT_2239 0.73 +0.5
396,824 - B158DRAFT_2239 0.73 +2.4
396,844 + B158DRAFT_2239 0.75 -1.8
396,874 + B158DRAFT_2239 0.76 -1.4
396,931 + B158DRAFT_2239 0.80 +0.7
396,944 - B158DRAFT_2239 0.81 +0.4
396,975 - B158DRAFT_2239 0.83 +0.5
396,993 - B158DRAFT_2239 0.84 -3.6
397,000 - B158DRAFT_2239 0.84 -0.4
397,076 + B158DRAFT_2239 0.89 +0.9
397,076 + B158DRAFT_2239 0.89 -0.4
397,076 + B158DRAFT_2239 0.89 +1.0
397,076 + B158DRAFT_2239 0.89 -1.1
397,081 - B158DRAFT_2239 0.89 +0.2
397,084 - B158DRAFT_2239 0.90 +1.3
397,100 + -0.1
397,108 - -0.0
397,138 + +0.8
397,146 - +0.6
397,155 + -1.9
397,155 + -0.3
397,209 - -2.5
397,211 + -0.7
397,211 + +0.8
397,219 - +1.3
397,219 - -1.4
397,219 - -0.3
397,266 - -1.8
397,283 + +0.1
397,291 - -0.8
397,309 - -1.4
397,309 - -1.1
397,313 + -0.5
397,361 - -0.1
397,361 - +0.1
397,361 - -1.3
397,379 + B158DRAFT_2240 0.10 +0.2
397,400 - B158DRAFT_2240 0.13 +0.1
397,451 + B158DRAFT_2240 0.19 +0.3
397,628 + B158DRAFT_2240 0.41 -0.2
397,683 + B158DRAFT_2240 0.48 -0.7
397,755 + B158DRAFT_2240 0.57 +0.6
397,763 - B158DRAFT_2240 0.58 +0.0
397,763 - B158DRAFT_2240 0.58 -0.1
397,809 - B158DRAFT_2240 0.64 -0.5
397,811 + B158DRAFT_2240 0.64 +0.2
397,819 - B158DRAFT_2240 0.65 +0.1
397,819 - B158DRAFT_2240 0.65 +0.9
397,819 - B158DRAFT_2240 0.65 -3.5
397,856 + B158DRAFT_2240 0.70 +1.3
397,856 + B158DRAFT_2240 0.70 -2.5
397,857 + B158DRAFT_2240 0.70 -1.4
397,857 + B158DRAFT_2240 0.70 +0.5
397,857 + B158DRAFT_2240 0.70 +2.3
397,857 + B158DRAFT_2240 0.70 -0.4
397,857 + B158DRAFT_2240 0.70 -1.1
397,857 + B158DRAFT_2240 0.70 +0.7
397,857 + B158DRAFT_2240 0.70 -0.2
397,864 - B158DRAFT_2240 0.71 -0.9
397,864 - B158DRAFT_2240 0.71 -1.2
397,864 - B158DRAFT_2240 0.71 +0.3
397,865 - B158DRAFT_2240 0.71 -0.3
397,865 - B158DRAFT_2240 0.71 +0.3
397,865 - B158DRAFT_2240 0.71 +0.8
397,865 - B158DRAFT_2240 0.71 -0.1
397,876 + B158DRAFT_2240 0.72 -0.1
397,876 + B158DRAFT_2240 0.72 -1.1
397,876 + B158DRAFT_2240 0.72 -0.3
397,876 + B158DRAFT_2240 0.72 -1.0
397,884 - B158DRAFT_2240 0.73 -0.3
397,952 - B158DRAFT_2240 0.82 -0.5
397,983 + B158DRAFT_2240 0.86 +0.2
397,991 - B158DRAFT_2240 0.87 -0.2
397,991 - B158DRAFT_2240 0.87 -0.5
398,078 + +1.8
398,156 - +0.1
398,156 - +0.5
398,185 + +0.6
398,294 + +1.2
398,294 + +0.0
398,294 + +0.1
398,302 - -0.1
398,302 - -0.6
398,302 - +0.7
398,302 - -1.2
398,391 + -0.4
398,397 + -0.4
398,397 + +1.8
398,397 + +0.9
398,405 - +1.2
398,414 - -0.1
398,422 + +0.1
398,422 + -0.4
398,422 + -0.4
398,422 + -0.6
398,422 + -0.3
398,422 + -0.5
398,422 + -0.5
398,430 - +0.7
398,430 - +0.2
398,430 - -0.1
398,454 + -1.1
398,462 - -2.5
398,535 + B158DRAFT_2241 0.10 +0.4
398,555 + B158DRAFT_2241 0.11 -0.4
398,578 + B158DRAFT_2241 0.12 -1.2
398,578 + B158DRAFT_2241 0.12 +0.1
398,618 - B158DRAFT_2241 0.13 -0.0
398,623 - B158DRAFT_2241 0.13 -0.3
398,667 - B158DRAFT_2241 0.15 -0.7
398,670 + B158DRAFT_2241 0.15 +0.3
398,764 - B158DRAFT_2241 0.18 -0.2
398,792 + B158DRAFT_2241 0.19 +0.1
398,794 + B158DRAFT_2241 0.19 -0.7
398,800 + B158DRAFT_2241 0.19 -1.3
398,809 + B158DRAFT_2241 0.20 -0.3
398,817 - B158DRAFT_2241 0.20 -1.0
398,855 - B158DRAFT_2241 0.21 -0.6
398,964 + B158DRAFT_2241 0.25 +0.9
398,992 + B158DRAFT_2241 0.26 +0.2
399,003 + B158DRAFT_2241 0.26 +0.9
399,007 + B158DRAFT_2241 0.26 +0.7
399,019 + B158DRAFT_2241 0.27 -1.3
399,019 + B158DRAFT_2241 0.27 -0.8
399,058 + B158DRAFT_2241 0.28 +2.0

Or see this region's nucleotide sequence